Difference between revisions of "DOCK Tutorials"
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*[[2008 DOCK tutorial with 1LAH]] | *[[2008 DOCK tutorial with 1LAH]] | ||
*[[2008 DOCK tutorial with Gleevec]] | *[[2008 DOCK tutorial with Gleevec]] | ||
| + | *[[2016 DOCK tutorial with zdfsg]] | ||
Disclaimer: The tutorials are written by students learning to use dock in a classroom setting. A new dock tutorial is created every year by the collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB. | Disclaimer: The tutorials are written by students learning to use dock in a classroom setting. A new dock tutorial is created every year by the collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB. | ||
Some of the input files may have been modified to reduce runtime in order to work well in a classroom setting. For production work, please consult the current [http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm DOCK Manual] for details. | Some of the input files may have been modified to reduce runtime in order to work well in a classroom setting. For production work, please consult the current [http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm DOCK Manual] for details. | ||
Revision as of 17:16, 1 February 2017
- Spring 2017 Dock tutorial #2 with PDB 3PGL
- 2017a DOCK tutorial #1 with PDB 4QMZ NEW
- 2017b DOCK tutorial #2 with PDB 3GPL NEW
- 2016 DOCK tutorial with Beta Trypsin
- 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)
- 2014 DOCK tutorial with HIV Protease
- 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase
- 2012 DOCK tutorial with Streptavidin
- 2011 DOCK tutorial with Streptavidin
- 2010 DOCK tutorial with Streptavidin
- 2009 DOCK tutorial with neuraminidase
- 2008 DOCK tutorial with 1LAH
- 2008 DOCK tutorial with Gleevec
- 2016 DOCK tutorial with zdfsg
Disclaimer: The tutorials are written by students learning to use dock in a classroom setting. A new dock tutorial is created every year by the collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB.
Some of the input files may have been modified to reduce runtime in order to work well in a classroom setting. For production work, please consult the current DOCK Manual for details.
