Difference between revisions of "Analysis Tools Repository"

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* Making 2D structures (JMOL, MarvinSketch)
 
* Making 2D structures (JMOL, MarvinSketch)
 
* Sequence alignments
 
* Sequence alignments
 +
* Test set statistics

Revision as of 10:25, 7 January 2020

This is intended to be the one-stop-shop for analysis tools and scripts for the lab.

See below for the intended list of things to be added (LastAdded: 01/07/2020 JDB)

  • How to update this repository
  • RMSD - MD (from DOCK pose vs from first frame)
  • MMGBSA - execution and analysis
  • Footprinting with amber
  • Multifootprint with dock
  • ACF - BASEM
  • Making 2D structures (JMOL, MarvinSketch)
  • Sequence alignments
  • Test set statistics