Difference between revisions of "Analysis Tools Repository"

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See below for the intended list of things to be added (LastAdded: 01/07/2020 JDB)
 
See below for the intended list of things to be added (LastAdded: 01/07/2020 JDB)
* How to update this repository
 
* RMSD - MD (from DOCK pose vs from first frame) Execution and analysis
 
 
* MMGBSA - execution and analysis
 
* MMGBSA - execution and analysis
 
* Footprinting with amber
 
* Footprinting with amber

Revision as of 12:16, 7 January 2020

This is intended to be the one-stop-shop for analysis tools and scripts for the lab.

See below for the intended list of things to be added (LastAdded: 01/07/2020 JDB)

  • MMGBSA - execution and analysis
  • Footprinting with amber
  • Multifootprint with dock
  • ACF - BASEM
  • Making 2D structures (JMOL, MarvinSketch)
  • Sequence alignments
  • Test set statistics
  • VS Protocol (small description, + GH link)
  • MOE inputs, descriptions, files, scripts?

Using this repository

How to update this repository

Analyses

RMSD - Molecular Dynamics