Difference between revisions of "2024 AMBER tutorial 2 with PDBID 1NDV"
From Rizzo_Lab
Stonybrook (talk | contribs) (→TLeap) |
Stonybrook (talk | contribs) |
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==Getting Started== | ==Getting Started== | ||
| − | = | + | =Before Simulation= |
| − | = | + | ==Structure== |
| − | = | + | ==Force Field Parameters== |
| − | =Equilibration= | + | ==TLEap== |
| + | |||
| + | =Minimization and Equilibration= | ||
=Production= | =Production= | ||
| Line 16: | Line 18: | ||
==RMSD== | ==RMSD== | ||
| + | |||
| + | ==Hydrogen Bonding== | ||
==MM-GBSA== | ==MM-GBSA== | ||
