Difference between revisions of "Rizzo Lab Members and Contact Information"
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== CONTACT == | == CONTACT == | ||
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|- style="background:white" | |- style="background:white" | ||
− | ! style="width: | + | ! style="width:50%" |Robert C. Rizzo |
Stony Brook University | Stony Brook University | ||
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Office: Math Tower 1-111 | Office: Math Tower 1-111 | ||
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Lab: Math Tower 3-129 | Lab: Math Tower 3-129 | ||
Stony Brook, NY 11794-3600 | Stony Brook, NY 11794-3600 | ||
− | ! style="width: | + | ! style="width:50%" |Email: rizzorc [at] gmail [dot] com |
Office: (631) 632-9340 | Office: (631) 632-9340 | ||
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Fax: (631) 632-8490 | Fax: (631) 632-8490 | ||
− | Website: | + | Website: https://ringo.ams.stonybrook.edu/~rizzo |
Wiki: ringo.ams.sunysb.edu | Wiki: ringo.ams.sunysb.edu | ||
+ | |} | ||
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− | + | [[Image: Rizzo_lab_2019.png|thumb|center|4000px|'''Current 2019 Rizzo Lab Members:''' ''from left to right'' Stephen, Guilherme, Rodger, Rob, Chris, John, Scott, and Lauren]] | |
− | + | ==RIZZO LAB == | |
− | + | {| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:100%" | |
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|- style="background:lightblue" | |- style="background:lightblue" | ||
− | ! style="width:30%" !| | + | ! style="width:30%" !|CURRENT MEMBERS |
− | ! style="width:20 | + | ! style="width:20%" !|Status |
− | |||
! style="width:20%" !|Project | ! style="width:20%" !|Project | ||
! style="width:10%" !|Year | ! style="width:10%" !|Year | ||
+ | ! style="width:20%" !|Email | ||
|- | |- | ||
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo] | |[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo] | ||
+ | ||Principal Investigator | ||
+ | ||Group leader | ||
+ | ||2004 - present | ||
||rizzorc [at] gmail [dot] com | ||rizzorc [at] gmail [dot] com | ||
− | || | + | |
− | || | + | |
− | || | + | |- |
+ | |John Bickel | ||
+ | ||Graduate Student | ||
+ | ||de novo design, COVID-19, genetic algorithm, refinement | ||
+ | ||2019 - present | ||
+ | ||john.bickel [at] stonybrook [dot] edu | ||
+ | |- | ||
+ | ||Christopher Corbo | ||
+ | ||Graduate Student | ||
+ | ||Test Set benchmarking, COVID-19 | ||
+ | ||2019 - present | ||
+ | ||christopher.corbo [at] stonybrook [dot] edu | ||
+ | |- | ||
+ | ||Steven Pak | ||
+ | ||Graduate Student | ||
+ | ||de novo design, FGFR2, Cheminformatics | ||
+ | ||2020 - present | ||
+ | ||steven.pak [at] stonybrook [dot] edu | ||
+ | |- | ||
+ | ||Brock Boysan | ||
+ | ||Graduate Student | ||
+ | ||refinement | ||
+ | ||2022 - present | ||
+ | ||brock.boysan [at] stonybrook [dot] edu | ||
+ | |- | ||
+ | ||Evan Spector | ||
+ | ||Masters Student | ||
+ | ||de novo design | ||
+ | ||2024 - present | ||
+ | ||evan.spector [at] stonybrook [dot] edu | ||
|- | |- | ||
− | | | + | |- style="background:lightgreen" |
− | || | + | ! style="width:20%" !|FORMER POSTDOCS |
− | | | + | ! style="width:20%" !|Status |
− | | | + | ! style="width:20%" !|Project |
− | | | + | ! style="width:10%" !|Year |
+ | ! style="width:20%" !|Position | ||
|- | |- | ||
− | | | + | |[https://www.gduarter.com Guilherme Duarte Ramos Matos] |
− | + | ||Postdoctoral | |
− | || | + | ||Cheminformatics integration, COVID-19 |
− | || | + | ||2019 - 2021 |
− | || | + | ||Guilherme.duarteramosmatos [at] stonybrook [dot] edu |
|- | |- | ||
− | | | + | |Dwight McGee |
− | || | + | ||Postdoctoral |
− | || | + | ||HIVgp41, Free energy calculations, de novo design |
− | || | + | ||2015 - 2018 |
− | || | + | || [http://www.silicontx.com/ Silicon Therapeutics] |
|- | |- | ||
− | | | + | |William J. Allen |
− | || | + | ||Postdoctoral |
− | |||
||HIVgp41, DOCK development | ||HIVgp41, DOCK development | ||
− | ||2011 - | + | ||2011 - 2015 |
+ | ||[http://www.tacc.utexas.edu/ TACC] | ||
|- | |- | ||
− | | | + | | Bentley Strockbine |
− | || | + | ||Postdoctoral |
− | || | + | ||HIVgp41 |
− | + | ||2005 - 2007 | |
− | || | + | || -- |
− | |- | ||
− | |||
− | |||
− | |||
− | |||
− | |||
|- | |- | ||
− | + | |- style="background:Violet" | |
− | + | ! style="width:20%" !|FORMER PHD STUDENTS | |
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− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |- style="background: | ||
− | ! style="width 20%" !| | ||
! style="width:20%" !|Status | ! style="width:20%" !|Status | ||
! style="width:20%" !|Project | ! style="width:20%" !|Project | ||
! style="width:10%" !|Year | ! style="width:10%" !|Year | ||
! style="width:20%" !|Position | ! style="width:20%" !|Position | ||
+ | |- | ||
+ | |[http://ringo.ams.sunysb.edu/~lprentis/ Lauren Prentis] | ||
+ | ||Graduate Student | ||
+ | ||Tsg101, de novo design, covalent docking, genetic algorithm | ||
+ | ||2016 - 2022 | ||
+ | ||lauren.prentis [at] stonybrook [dot] edu | ||
+ | |- | ||
+ | |Yuchen Zhou | ||
+ | ||PhD / Masters | ||
+ | ||BoNT/E, DOCK scoring functions, FABP5 | ||
+ | ||2012 - 2018 | ||
+ | || Postdoc, [http://filizolalab.org/ Filizola Lab] at [https://icahn.mssm.edu/ ISMMS] | ||
+ | |- | ||
+ | |Jiaye Guo | ||
+ | ||PhD | ||
+ | ||Solvated footprints, Small-molecule inhibitor for HER2 | ||
+ | ||2013 - 2018 | ||
+ | || Postdoctoral, [http://www.choderalab.org/ Chodera Lab] at [https://www.mskcc.org/ MSKCC] | ||
+ | |- | ||
+ | |Courtney Singleton | ||
+ | ||MD / PhD | ||
+ | ||HIVgp41, De novo design, genetic algorithm | ||
+ | ||2014 - 2018 | ||
+ | ||Stony Brook Medical School | ||
+ | |- | ||
+ | |Brian Fochtman | ||
+ | ||PhD | ||
+ | ||HIVgp41, DOCK development | ||
+ | ||2011 - 2017 | ||
+ | ||The FDA | ||
+ | |- | ||
+ | |Lingling Jiang | ||
+ | ||PhD | ||
+ | ||HIVgp41, Pharmacophore modeling | ||
+ | ||2010 - 2015 | ||
+ | ||Novo Nordisk | ||
+ | |- | ||
+ | |Yulin Huang | ||
+ | ||PhD | ||
+ | ||EGFR, IGF-IR | ||
+ | ||2008 - 2013 | ||
+ | ||Wall Street | ||
|- | |- | ||
|Sudipto Mukherjee | |Sudipto Mukherjee | ||
− | || | + | ||PhD / Masters |
||DOCK development, HIVgp41 | ||DOCK development, HIVgp41 | ||
||2005 - 2012 | ||2005 - 2012 | ||
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|- | |- | ||
|[http://docking.org/~tbalius/ Trent E. Balius] | |[http://docking.org/~tbalius/ Trent E. Balius] | ||
− | || | + | ||PhD |
||EGFR, HIVgp41, DOCK development | ||EGFR, HIVgp41, DOCK development | ||
||2007 - 2012 | ||2007 - 2012 | ||
− | || | + | ||Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the [https://frederick.cancer.gov/ Frederick National Lab for Cancer Research] |
+ | |- | ||
+ | | Noel Carrascal | ||
+ | ||PhD (co-advisor) | ||
+ | ||DOCK method development | ||
+ | ||2005 - 2007 | ||
+ | || -- | ||
+ | |- | ||
+ | |- style="background:Yellow" | ||
+ | ! style="width:20%" !|FORMER MASTERS STUDENTS | ||
+ | ! style="width:20%" !|Status | ||
+ | ! style="width:20%" !|Project | ||
+ | ! style="width:10%" !|Year | ||
+ | ! style="width:20%" !|Position | ||
+ | |- | ||
+ | |Stephen Telehany | ||
+ | ||Masters | ||
+ | ||Zika Virus | ||
+ | ||2017 - 2020 | ||
+ | || -- | ||
+ | |- | ||
+ | |Patrick Holden | ||
+ | ||Masters | ||
+ | ||HIVgp41 | ||
+ | ||2009 - 2011 | ||
+ | || -- | ||
+ | |- | ||
+ | | Rashi Goyal | ||
+ | ||Masters | ||
+ | ||Influenza, HIV | ||
+ | ||2007 - 2010 | ||
+ | || -- | ||
+ | |- | ||
+ | | Brian McGillick | ||
+ | ||Masters | ||
+ | ||HIVgp41 | ||
+ | ||2007 - 2010 | ||
+ | || -- | ||
+ | |- | ||
+ | |- style="background:lightSalmon" | ||
+ | ! style="width:20%" !|FORMER UNDERGRADUATE STUDENTS | ||
+ | ! style="width:20%" !|Status | ||
+ | ! style="width:20%" !|Project | ||
+ | ! style="width:10%" !|Year | ||
+ | ! style="width:20%" !|Position | ||
+ | |- | ||
+ | |Rodger Tan | ||
+ | ||Undergraduate | ||
+ | ||Test Set, benchmarking, de novo design | ||
+ | ||2019 - 2020 | ||
+ | || -- | ||
+ | |- | ||
+ | |Scott Laverty | ||
+ | ||Undergraduate | ||
+ | ||DOCK6 benchmarking with Autodock4 | ||
+ | ||2019 - 2020 | ||
+ | ||UPenn Chemistry Doctoral Program | ||
+ | |- | ||
+ | |Brian Ralph | ||
+ | ||Undergraduate | ||
+ | ||Fatty acid binding protein, De novo design | ||
+ | ||2013 - 2015 | ||
+ | ||Dental school | ||
|- | |- | ||
| Jibril Ashiru-Balogun | | Jibril Ashiru-Balogun | ||
− | ||Undergraduate | + | ||Undergraduate |
||HIVgp41 | ||HIVgp41 | ||
||2010 - 2011 | ||2010 - 2011 | ||
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|- | |- | ||
| Brian Shea | | Brian Shea | ||
− | ||Undergraduate | + | ||Undergraduate |
||Kinases | ||Kinases | ||
||2010 | ||2010 | ||
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|- | |- | ||
| Patrick Murphy | | Patrick Murphy | ||
− | ||Undergraduate | + | ||Undergraduate |
||Influenza | ||Influenza | ||
||2009 - 2010 | ||2009 - 2010 | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
|| -- | || -- | ||
|- | |- | ||
| Kenneth Ascher | | Kenneth Ascher | ||
− | ||Undergraduate | + | ||Undergraduate |
− | ||DOCK | + | ||DOCK method development |
||2009 - 2010 | ||2009 - 2010 | ||
|| -- | || -- | ||
|- | |- | ||
| Dimir Abrar | | Dimir Abrar | ||
− | ||Undergraduate | + | ||Undergraduate |
− | ||HIVRT | + | ||HIVRT crossdocking |
||2008 - 2009 | ||2008 - 2009 | ||
|| -- | || -- | ||
|- | |- | ||
| Chetan Raj Rupakheti | | Chetan Raj Rupakheti | ||
− | ||Summer | + | ||Summer |
||HIVgp41 | ||HIVgp41 | ||
||2008 | ||2008 | ||
|| -- | || -- | ||
|- | |- | ||
− | | | + | | Ricky Chachra |
− | || | + | ||Undergraduate |
− | || | + | ||Influenza drug resistance |
||2005 - 2007 | ||2005 - 2007 | ||
− | || -- | + | || -- |
|- | |- | ||
− | | | + | | Amee Patel |
− | || | + | ||Undergraduate |
− | || | + | ||Testset development |
||2005 - 2007 | ||2005 - 2007 | ||
|| -- | || -- | ||
|- | |- | ||
− | | | + | |- style="background:Hotpink" |
− | || | + | ! style="width:20%" !|FORMER HIGH SCHOOL STUDENTS |
− | | | + | ! style="width:20%" !|Status |
− | | | + | ! style="width:20%" !|Project |
− | | | + | ! style="width:10%" !|Year |
+ | ! style="width:20%" !|Position | ||
|- | |- | ||
− | | | + | | Arya Glenn |
− | || | + | ||High School Student |
− | || | + | ||Alzheimer’s disease |
− | || | + | ||2019 - 2020 |
|| -- | || -- | ||
|- | |- | ||
− | |||
|} | |} |
Latest revision as of 12:56, 18 September 2024
CONTACT
Robert C. Rizzo
Stony Brook University Department of Applied Mathematics and Statistics Office: Math Tower 1-111 Lab: Math Tower 3-129 Stony Brook, NY 11794-3600 |
Email: rizzorc [at] gmail [dot] com
Office: (631) 632-9340 Lab: (631) 632-8519 Fax: (631) 632-8490 Website: https://ringo.ams.stonybrook.edu/~rizzo Wiki: ringo.ams.sunysb.edu |
---|
RIZZO LAB
CURRENT MEMBERS | Status | Project | Year | |
---|---|---|---|---|
Dr. Robert C. Rizzo | Principal Investigator | Group leader | 2004 - present | rizzorc [at] gmail [dot] com
|
John Bickel | Graduate Student | de novo design, COVID-19, genetic algorithm, refinement | 2019 - present | john.bickel [at] stonybrook [dot] edu |
Christopher Corbo | Graduate Student | Test Set benchmarking, COVID-19 | 2019 - present | christopher.corbo [at] stonybrook [dot] edu |
Steven Pak | Graduate Student | de novo design, FGFR2, Cheminformatics | 2020 - present | steven.pak [at] stonybrook [dot] edu |
Brock Boysan | Graduate Student | refinement | 2022 - present | brock.boysan [at] stonybrook [dot] edu |
Evan Spector | Masters Student | de novo design | 2024 - present | evan.spector [at] stonybrook [dot] edu |
FORMER POSTDOCS | Status | Project | Year | Position |
Guilherme Duarte Ramos Matos | Postdoctoral | Cheminformatics integration, COVID-19 | 2019 - 2021 | Guilherme.duarteramosmatos [at] stonybrook [dot] edu |
Dwight McGee | Postdoctoral | HIVgp41, Free energy calculations, de novo design | 2015 - 2018 | Silicon Therapeutics |
William J. Allen | Postdoctoral | HIVgp41, DOCK development | 2011 - 2015 | TACC |
Bentley Strockbine | Postdoctoral | HIVgp41 | 2005 - 2007 | -- |
FORMER PHD STUDENTS | Status | Project | Year | Position |
Lauren Prentis | Graduate Student | Tsg101, de novo design, covalent docking, genetic algorithm | 2016 - 2022 | lauren.prentis [at] stonybrook [dot] edu |
Yuchen Zhou | PhD / Masters | BoNT/E, DOCK scoring functions, FABP5 | 2012 - 2018 | Postdoc, Filizola Lab at ISMMS |
Jiaye Guo | PhD | Solvated footprints, Small-molecule inhibitor for HER2 | 2013 - 2018 | Postdoctoral, Chodera Lab at MSKCC |
Courtney Singleton | MD / PhD | HIVgp41, De novo design, genetic algorithm | 2014 - 2018 | Stony Brook Medical School |
Brian Fochtman | PhD | HIVgp41, DOCK development | 2011 - 2017 | The FDA |
Lingling Jiang | PhD | HIVgp41, Pharmacophore modeling | 2010 - 2015 | Novo Nordisk |
Yulin Huang | PhD | EGFR, IGF-IR | 2008 - 2013 | Wall Street |
Sudipto Mukherjee | PhD / Masters | DOCK development, HIVgp41 | 2005 - 2012 | Postdoc, Voelz Lab |
Trent E. Balius | PhD | EGFR, HIVgp41, DOCK development | 2007 - 2012 | Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the Frederick National Lab for Cancer Research |
Noel Carrascal | PhD (co-advisor) | DOCK method development | 2005 - 2007 | -- |
FORMER MASTERS STUDENTS | Status | Project | Year | Position |
Stephen Telehany | Masters | Zika Virus | 2017 - 2020 | -- |
Patrick Holden | Masters | HIVgp41 | 2009 - 2011 | -- |
Rashi Goyal | Masters | Influenza, HIV | 2007 - 2010 | -- |
Brian McGillick | Masters | HIVgp41 | 2007 - 2010 | -- |
FORMER UNDERGRADUATE STUDENTS | Status | Project | Year | Position |
Rodger Tan | Undergraduate | Test Set, benchmarking, de novo design | 2019 - 2020 | -- |
Scott Laverty | Undergraduate | DOCK6 benchmarking with Autodock4 | 2019 - 2020 | UPenn Chemistry Doctoral Program |
Brian Ralph | Undergraduate | Fatty acid binding protein, De novo design | 2013 - 2015 | Dental school |
Jibril Ashiru-Balogun | Undergraduate | HIVgp41 | 2010 - 2011 | -- |
Brian Shea | Undergraduate | Kinases | 2010 | -- |
Patrick Murphy | Undergraduate | Influenza | 2009 - 2010 | -- |
Kenneth Ascher | Undergraduate | DOCK method development | 2009 - 2010 | -- |
Dimir Abrar | Undergraduate | HIVRT crossdocking | 2008 - 2009 | -- |
Chetan Raj Rupakheti | Summer | HIVgp41 | 2008 | -- |
Ricky Chachra | Undergraduate | Influenza drug resistance | 2005 - 2007 | -- |
Amee Patel | Undergraduate | Testset development | 2005 - 2007 | -- |
FORMER HIGH SCHOOL STUDENTS | Status | Project | Year | Position |
Arya Glenn | High School Student | Alzheimer’s disease | 2019 - 2020 | -- |