Difference between revisions of "Virtual Screening Protocol"

From Rizzo_Lab
Jump to: navigation, search
 
Line 1: Line 1:
Virtual Screening Protocol
+
In this document, the current Rizzo group protocol will be described in detail.  This protocol has be through successive iterations and has be used to select compounds for Flu and HIVgp41 (n=112). 
 +
 
 +
==ZINC Database==
 +
 
 +
==Downloading and Preparation of Receptor==
 +
 
 +
==DOCKing==
 +
 
 +
==Minimization of Poses==
 +
 
 +
==Pose Rescoring using Molecular Footprints==
 +
 
 +
==Clustering using MOE==
 +
 
 +
==Compound Selection==

Revision as of 12:23, 28 June 2010

In this document, the current Rizzo group protocol will be described in detail. This protocol has be through successive iterations and has be used to select compounds for Flu and HIVgp41 (n=112).

ZINC Database

Downloading and Preparation of Receptor

DOCKing

Minimization of Poses

Pose Rescoring using Molecular Footprints

Clustering using MOE

Compound Selection