Difference between revisions of "2010 AMS-536 Spring"
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'''Project Approval Sheet''' | '''Project Approval Sheet''' | ||
| − | *[http:// | + | *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.student.info.doc project.student.info.doc] |
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'''Final Report Guidelines and Example Final Papers''' | '''Final Report Guidelines and Example Final Papers''' | ||
| − | *[http:// | + | *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.guidelines.pdf project.guidelines.pdf] |
| − | *[http:// | + | *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.example.dGhyd.pdf project.example.dGhyd.pdf] |
| − | *[http:// | + | *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.example.MMPS.pdf project.example.MMPS.pdf] |
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| 2010.04.07 || Cheglikov, Alex; Cheng-Tsung, Eric || The design of novel modulators of actin assembly; Interaction between InhA and it's inhibitors | | 2010.04.07 || Cheglikov, Alex; Cheng-Tsung, Eric || The design of novel modulators of actin assembly; Interaction between InhA and it's inhibitors | ||
| − | | 2010.04.12 || Gorgani, Farzan; Hauser, Kevin; || Talk Title ; | + | |- |
| + | | 2010.04.12 || Gorgani, Farzan; Hauser, Kevin; || Talk Title ; mTER | ||
|- | |- | ||
| 2010.04.14 || Jiang, Lingling; Kirkup, Colleen|| Pharmacophore modeling based on Docking and MD for the inhibition of Gp41 ; Talk Title | | 2010.04.14 || Jiang, Lingling; Kirkup, Colleen|| Pharmacophore modeling based on Docking and MD for the inhibition of Gp41 ; Talk Title | ||
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| 2010.05.03 || Jiang, Lingling; Kirkup, Colleen|| Pharmacophore modeling based on Docking and MD for the inhibition of Gp41; Talk Title | | 2010.05.03 || Jiang, Lingling; Kirkup, Colleen|| Pharmacophore modeling based on Docking and MD for the inhibition of Gp41; Talk Title | ||
|- | |- | ||
| − | | 2010.05.05 || '''Last Day of Class''' <br> Li, Haoquan; Neckles, Carla|| | + | | 2010.05.05 || '''Last Day of Class''' <br> Li, Haoquan; Neckles, Carla|| Early Stages of Damage Recognition of human 8-oxoguanine glycosylase; Computational Studies of Thiolactomycin and KasA from the FASII Pathway in Mycobacterium tuberculosis |
|- | |- | ||
| 2010.05.12 || '''Final written report due by 5PM, May 12, 2010. Late papers will not be accepted. See above for sample reports and detailed guidelines.''' || '''Give hard copy to Sudipto Mukherjee (Math Tower room 3-129) and email electronic copy to rizzorc@gmail.com''' | | 2010.05.12 || '''Final written report due by 5PM, May 12, 2010. Late papers will not be accepted. See above for sample reports and detailed guidelines.''' || '''Give hard copy to Sudipto Mukherjee (Math Tower room 3-129) and email electronic copy to rizzorc@gmail.com''' | ||
|- | |- | ||
|} | |} | ||
Latest revision as of 16:23, 5 August 2013
| Instructor | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] |
|---|---|
| Course No. | AMS-536 / CHE-536 |
| Location/Time | Math Tower, Room S235 (COMPUTER LAB next to SINC site), Mon/Wed 3:50PM - 5:10PM |
| Office Hours | Anytime or by appointment, Room 1-101, Dept. of Applied Math & Statistics |
| Teaching Assistant | Sudipto Mukherjee, Room 3-129, 2-8519, Dept. of Applied Math & Statistics |
Project Information
Project Approval Sheet
Oral Presentation Guidlines: These meetings should be formal and your chance to tell a complete story. Talks should be presented in PPT format and be 30 minutes long. The purpose of your talks is for you to clearly and concisely present your overall progress to date including appropriate background material and interpretation of your results. Talks should be arranged in the following order:
- Introduction/Background (include biological relevance)
- Specifics of Your System
- Computational Details (theory)
- Computational Details (system setup)
- Results and Discussion (include a critical interpretation of your results)
- Conclusions
- Future
- Acknowledgments
Final Report Guidelines and Example Final Papers
Tutorials, Software Links, and Other Relevant Class Information
Schedule
Note: Each participant please update the Wiki as required with the title of your talk.
| Date | Participant | Talk |
| 2010.01.25 | First Day of Class Group Study |
Organizational Meeting / Mathlab accounts |
| 2010.01.27 | Group Study | Visualization software #1, Misc unix skills VMD, MOE, Chimera, vi, general unix cmds, shell scripting |
| 2010.02.01 | Group Study | Visualization software #2, Misc unix skills VMD, MOE, Chimera, vi, general unix cmds, shell scripting Seawulf accounts |
| 2010.02.03 | Group Study | Visualization software #3, Misc unix skills VMD, MOE, Chimera, vi, general unix cmds, shell scripting Seawulf accounts |
| 2010.02.08 | Group Study | Tutorials: Group 1=DOCK, Group 2=AMBER project discussion |
| 2010.02.10 | Group Study | Tutorials: Group 1=DOCK, Group 2=AMBER project discussion |
| 2010.02.15 | Group Study | Tutorials: Group 1=DOCK, Group 2=AMBER project discussion |
| 2010.02.17 | Group Study | Tutorials: Group 1=DOCK, Group 2=AMBER project discussion |
| 2010.02.22 | Group Study | Tutorials: Group 1=AMBER, Group 2=DOCK project discussion |
| 2010.02.24 | Group Study | Tutorials: Group 1=AMBER, Group 2=DOCK project discussion |
| 2010.03.01 | Group Study | Tutorials: Group 1=AMBER, Group 2=DOCK project discussion |
| 2010.03.03 | Group Study | Tutorials: Group 1=AMBER, Group 2=DOCK project discussion |
| 2010.03.08 | Group Study | Project Setups / Troubleshooting |
| 2010.03.10 | Group Study | Project Setups / Troubleshooting |
| 2010.03.15 | Group Study | Project Setups / Troubleshooting |
| 2010.03.17 | Group Study | Project Setups / Troubleshooting |
| 2010.03.22 | Group Study | Project Setups / Troubleshooting |
| 2010.03.24 | Group Study | Project Setups / Troubleshooting |
| 2010.03.29 | SPRING BREAK | NO CLASS |
| 2010.03.31 | SPRING BREAK | NO CLASS |
| 2010.04.05 | Adler, Jeremy; Chang, Andrew | Talk Title ; Talk Title |
| 2010.04.07 | Cheglikov, Alex; Cheng-Tsung, Eric | The design of novel modulators of actin assembly; Interaction between InhA and it's inhibitors |
| 2010.04.12 | Gorgani, Farzan; Hauser, Kevin; | Talk Title ; mTER |
| 2010.04.14 | Jiang, Lingling; Kirkup, Colleen | Pharmacophore modeling based on Docking and MD for the inhibition of Gp41 ; Talk Title |
| 2010.04.19 | Li, Haoquan; Neckles, Carla | Talk Title ; Computational Studies of Thiolactomycin and KasA from the FASII Pathway in Mycobacterium tuberculosis |
| 2010.04.21 | Preliminary Report Due Adler, Jeremy; Chang, Andrew |
Talk Title ; Talk Title |
| 2010.04.26 | Cheglikov, Alex; Cheng-Tsung, Eric | Talk Title ; Interaction between InhA and it's inhibitors |
| 2010.04.28 | Gorgani, Farzan; Hauser, Kevin; | determining the conformation of changes of hnox ; Mechanics and Dynamics of a Mitochondrial Transcription Terminator |
| 2010.05.03 | Jiang, Lingling; Kirkup, Colleen | Pharmacophore modeling based on Docking and MD for the inhibition of Gp41; Talk Title |
| 2010.05.05 | Last Day of Class Li, Haoquan; Neckles, Carla |
Early Stages of Damage Recognition of human 8-oxoguanine glycosylase; Computational Studies of Thiolactomycin and KasA from the FASII Pathway in Mycobacterium tuberculosis |
| 2010.05.12 | Final written report due by 5PM, May 12, 2010. Late papers will not be accepted. See above for sample reports and detailed guidelines. | Give hard copy to Sudipto Mukherjee (Math Tower room 3-129) and email electronic copy to rizzorc@gmail.com |
