Difference between revisions of "DOCK Benchmarking"

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| <center>2015.11.01, Yuchen</center>
 
| <center>2015.11.01, Yuchen</center>
 
| <center>PR, desc_1Grid-10VO+5HUN</center>
 
| <center>PR, desc_1Grid-10VO+5HUN</center>
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| <center>-</center>
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| <center>-</center>
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| <center>DOCK6.8.2015.10.30</center>
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| <center>-</center>
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|-
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| <center>2015.11.04, Yuchen</center>
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| <center>Rescoring, Hawkins_GBSA</center>
 
| <center>-</center>
 
| <center>-</center>
 
| <center>-</center>
 
| <center>-</center>

Revision as of 13:53, 4 November 2015

ABBREVIATIONS:

PR = Pose Reproduction

VS = Virtual Screening

desc = Descriptor Score

Grid = Grid Score

MG = Multi Grid Score

Ph4 = Pharmacophore Score

HUN = Hungarian RMSD Score

TAN = Tanimoto Score

VO = Volume Overlap Score

Example for combination of scoring functions: desc_1Grid+5Ph4-10VO means descriptor score using combination "Descriptor Score = 1 * Grid Score + 5 * Pharmacophore Socre - 10 * Volume Overlap Score"



Date, Author
Experiment
Results
Timing
DOCK Version
Notes
2015.11.01, Yuchen
PR, Grid
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, Ph4
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_Ph4
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_VO
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+1Ph4
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+10Ph4
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-1VO
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-20VO
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-1TAN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-20TAN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+1HUN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+10HUN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+1Ph4-1VO
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+5Ph4-10VO
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+1Ph4-1TAN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+5Ph4-10TAN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+1Ph4+1HUN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid+5Ph4+5HUN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-1VO-1TAN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-10VO-10TAN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-1VO+1HUN
-
-
DOCK6.8.2015.10.30
-
2015.11.01, Yuchen
PR, desc_1Grid-10VO+5HUN
-
-
DOCK6.8.2015.10.30
-
2015.11.04, Yuchen
Rescoring, Hawkins_GBSA
-
-
DOCK6.8.2015.10.30
-