Difference between revisions of "AutoDock4 Benchmark Results"

From Rizzo_Lab
Jump to: navigation, search
(Created page with "{| align="center" border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:95%" |- style="background:cornflowerblue" | <center>'''Date, Autho...")
 
 
(6 intermediate revisions by the same user not shown)
Line 9: Line 9:
 
|-
 
|-
  
 +
| <center>2020.5.20, Laverty</center>
 +
| <center>GA=10 Grid_size(x=15A, y=15A, z=15A,</center>
 +
| <center>Success 65.7% Scoring 0% Sampling 34.3%</center>
 +
| <center>152.39</center>
 +
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
 +
| <center>Nonintegral charges fixed, Protein am1bcc Ligand Gastieger</center>
 +
|-
  
| <center>2015.11.01, Yuchen</center>
+
| <center>2020.3.30, Laverty</center>
| <center>PR, Grid</center>
+
| <center>GA=10 Grid_size(x=15A, y=15A, z=15A,</center>
| <center>Success 73.1% Scoring 17.5% Sampling 9.4%</center>
+
| <center>Success 63.95% Scoring 12.94% Sampling 23.11%</center>
| <center>263</center>
+
| <center>213.44</center>
| <center>DOCK6.8.2015.10.30</center>
+
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
| <center>-</center>
+
| <center>Protein Gastieger Ligand Gastieger</center>
 +
|-
 +
 
 +
| <center>2020.4.8, Laverty</center>
 +
| <center>GA=50 Grid_size(x=15A, y=15A, z=15A,</center>
 +
| <center>Success 66.54% Scoring 19.65% Sampling 13.81%</center>
 +
| <center>798.35</center>
 +
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
 +
| <center>Protein Gastieger Ligand Gastieger</center>
 +
|-
 +
 
 +
| <center>2020.4.16, Laverty</center>
 +
| <center>GA=50 Grid_size(x=15A, y=15A, z=15A,</center>
 +
| <center>Success 66.44% Scoring 20.23% Sampling 13.33%</center>
 +
| <center>789.15</center>
 +
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
 +
| <center>Protein AM1BCC Ligand Gastieger</center>
 +
|-
 +
 
 +
| <center>2020.5.19, Laverty</center>
 +
| <center>GA=10 Grid_size(x=15A, y=15A, z=15A,</center>
 +
| <center>Success 64.6% Scoring 0% Sampling 35.4%</center>
 +
| <center>151.22</center>
 +
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
 +
| <center>default grid size, Protein am1bcc Ligand Gastieger</center>
 +
|-
 +
 
 +
| <center>2020.7.30, Laverty</center>
 +
| <center>GA=10 Grid_size(x=22.5A, y=22.5A, z=22.5A,</center>
 +
| <center>Success 58.1% Scoring 17.8% Sampling 24.1%</center>
 +
| <center>152.00</center>
 +
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
 +
| <center>Protein Amber Ligand Gasteiger</center>
 +
|-
 +
 
 +
| <center>2020.5.19, Laverty</center>
 +
| <center>GA=10 Grid_size(DOCK6 grid size)</center>
 +
| <center>Success 28.38% Scoring 0% Sampling 71.62%</center>
 +
| <center>72.37</center>
 +
| <center>docked AutoDock4.2.6, rescored DOCK6.9</center>
 +
| <center>default DOCK grid size, Protein Amber Ligand Gastieger</center>
 
|-
 
|-

Latest revision as of 20:45, 10 August 2020

Date, Author
Experiment
Results
Timing (s)
DOCK Version
Notes
2020.5.20, Laverty
GA=10 Grid_size(x=15A, y=15A, z=15A,
Success 65.7% Scoring 0% Sampling 34.3%
152.39
docked AutoDock4.2.6, rescored DOCK6.9
Nonintegral charges fixed, Protein am1bcc Ligand Gastieger
2020.3.30, Laverty
GA=10 Grid_size(x=15A, y=15A, z=15A,
Success 63.95% Scoring 12.94% Sampling 23.11%
213.44
docked AutoDock4.2.6, rescored DOCK6.9
Protein Gastieger Ligand Gastieger
2020.4.8, Laverty
GA=50 Grid_size(x=15A, y=15A, z=15A,
Success 66.54% Scoring 19.65% Sampling 13.81%
798.35
docked AutoDock4.2.6, rescored DOCK6.9
Protein Gastieger Ligand Gastieger
2020.4.16, Laverty
GA=50 Grid_size(x=15A, y=15A, z=15A,
Success 66.44% Scoring 20.23% Sampling 13.33%
789.15
docked AutoDock4.2.6, rescored DOCK6.9
Protein AM1BCC Ligand Gastieger
2020.5.19, Laverty
GA=10 Grid_size(x=15A, y=15A, z=15A,
Success 64.6% Scoring 0% Sampling 35.4%
151.22
docked AutoDock4.2.6, rescored DOCK6.9
default grid size, Protein am1bcc Ligand Gastieger
2020.7.30, Laverty
GA=10 Grid_size(x=22.5A, y=22.5A, z=22.5A,
Success 58.1% Scoring 17.8% Sampling 24.1%
152.00
docked AutoDock4.2.6, rescored DOCK6.9
Protein Amber Ligand Gasteiger
2020.5.19, Laverty
GA=10 Grid_size(DOCK6 grid size)
Success 28.38% Scoring 0% Sampling 71.62%
72.37
docked AutoDock4.2.6, rescored DOCK6.9
default DOCK grid size, Protein Amber Ligand Gastieger