Difference between revisions of "Rizzo Lab Members and Contact Information"

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== CONTACT ==
 
== CONTACT ==
−
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
+
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:100%"
 
|- style="background:white"
 
|- style="background:white"
−
! style="width:30%" |Robert C. Rizzo
+
! style="width:50%" |Robert C. Rizzo
  
 
Stony Brook University  
 
Stony Brook University  
Line 9: Line 9:
  
 
Office: Math Tower 1-111
 
Office: Math Tower 1-111
−
+
 
 
Lab:    Math Tower 3-129
 
Lab:    Math Tower 3-129
  
 
Stony Brook, NY 11794-3600
 
Stony Brook, NY 11794-3600
  
−
! style="width:30%" |Email:  rizzorc@gmail.com
+
! style="width:50%" |Email:  rizzorc [at] gmail [dot] com
  
 
Office: (631) 632-9340
 
Office: (631) 632-9340
Line 22: Line 22:
 
Fax:    (631) 632-8490
 
Fax:    (631) 632-8490
  
−
Website: rizzo.ams.sunysb.edu
+
Website: https://ringo.ams.stonybrook.edu/~rizzo
  
 
Wiki: ringo.ams.sunysb.edu
 
Wiki: ringo.ams.sunysb.edu
 +
|}
  
−
! style="width:30%" |Rob cell: 631 944 2891
 
−
 
−
Trent home: 631 751 2864
 
−
 
−
Trent cell: 516 381 0926
 
−
 
−
Brian McGillick cell: 410 991 7188
 
−
 
−
Sudipto cell: 631 220 5744
 
−
 
−
Yulin cell: 631 374 1302
 
−
 
−
Lingling cell: 631 371 1707
 
−
 
−
Patrick home: 631 828 1637
 
−
 
−
Patrick cell: 203 273 6149
 
  
−
Jibril Cell : 917 294 8570
+
[[Image: Rizzo_lab_2019.png|thumb|center|4000px|'''Current 2019 Rizzo Lab Members:''' ''from left to right'' Stephen, Guilherme, Rodger, Rob, Chris, John, Scott, and Lauren]]
  
−
Fochtman cell: 631 790 7738
+
==RIZZO LAB ==
−
 
+
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:100%"
−
Joe cell: 612 581 8355
 
−
|-
 
−
|}
 
−
 
 
−
== CURRENT MEMBERS ==
 
−
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
 
|- style="background:lightblue"
 
|- style="background:lightblue"
−
! style="width:30%" !|Name
+
! style="width:30%" !|CURRENT MEMBERS
−
! style="width:20%" !|E-mail
+
! style="width:20%" !|Status
−
! style="width:10%" !|Status
 
 
! style="width:20%" !|Project
 
! style="width:20%" !|Project
 
! style="width:10%" !|Year
 
! style="width:10%" !|Year
 +
! style="width:20%" !|Email
 
|-
 
|-
 
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo]
 
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo]
−
||[[Image:Rob.email.png]]
+
||Principal  Investigator
−
||PI
+
||Group leader
−
||group leader
 
 
||2004 - present
 
||2004 - present
 +
||rizzorc [at] gmail [dot] com
 +
 +
 +
|-
 +
|John Bickel
 +
||Graduate Student
 +
||de novo design, COVID-19, genetic algorithm, refinement
 +
||2019 - present
 +
||john.bickel [at] stonybrook [dot] edu
 
|-
 
|-
−
|[http://www.ams.sunysb.edu/~tbalius/ Trent E. Balius]
+
||Christopher Corbo
−
||[[Image:Trent.email.png]]
+
||Graduate Student
−
||graduate student
+
||Test Set benchmarking, COVID-19
−
||EGFR, HIVgp41, DOCK development
+
||2019 - present
−
||2007 - present
+
||christopher.corbo [at] stonybrook [dot] edu
 +
|-
 +
||Steven Pak
 +
||Graduate Student
 +
||de novo design, FGFR2, Cheminformatics
 +
||2020 - present
 +
||steven.pak [at] stonybrook [dot] edu
 +
|-
 +
||Brock Boysan
 +
||Graduate Student
 +
||refinement
 +
||2022 - present
 +
||brock.boysan [at] stonybrook [dot] edu
 
|-
 
|-
−
|Yulin Huang
+
||Evan Spector
−
||[[Image:Yulin.email.png]]
+
||Masters Student
−
||graduate student
+
||de novo design
−
||EGFR
+
||2024 - present
−
||2007 - present
+
||evan.spector [at] stonybrook [dot] edu
 
|-
 
|-
−
|Lingling Jiang
+
|- style="background:lightgreen"
−
||[[Image:Lingling.email.png]]
+
! style="width:20%" !|FORMER POSTDOCS
−
||graduate student
+
! style="width:20%" !|Status
−
||HIV
+
! style="width:20%" !|Project
−
||2010 - present
+
! style="width:10%" !|Year
 +
! style="width:20%" !|Position
 
|-
 
|-
−
|[http://rizzo.ams.sunysb.edu/~sudipto/ Sudipto Mukherjee]
+
|[https://www.gduarter.com Guilherme Duarte Ramos Matos]
−
||[[Image:Sudipto.email.png]]
+
||Postdoctoral
−
||graduate student
+
||Cheminformatics integration, COVID-19
−
||DOCK development, HIVgp41
+
||2019 - 2021
−
||2005 - present
+
||Guilherme.duarteramosmatos [at] stonybrook [dot] edu
 
|-
 
|-
−
|Brian Fochtman
+
|Dwight McGee
−
||[[Image:brian_email.png]]
+
||Postdoctoral
−
||Graduate Student
+
||HIVgp41, Free energy calculations, de novo design
−
||Dock Development
+
||2015 - 2018
−
||February 2011 - present
+
|| [http://www.silicontx.com/ Silicon Therapeutics]
 
|-
 
|-
−
|Patrick Holden
+
|William J. Allen
−
||patrick.m.holden@gmail.com
+
||Postdoctoral
−
||Research Aide
+
||HIVgp41, DOCK development
−
||HIVgp41
+
||2011 - 2015
−
||Summer 2009 - present
+
||[http://www.tacc.utexas.edu/ TACC]
 
|-
 
|-
−
|Jibril Ashiru-Balogun
+
| Bentley Strockbine
−
||[[Image:Jibril.email.png]]
+
||Postdoctoral 
−
||Undergraduate Student
+
||HIVgp41
−
||HIVgp41
+
||2005 - 2007
−
||Summer 2010 - present
+
|| --
 
|-
 
|-
−
|[http://rizzo.ams.sunysb.edu/~wjallen/ William Joseph Allen]
+
|- style="background:Violet"
−
||[[Image:Joe allen email.png]]
+
! style="width:20%" !|FORMER PHD STUDENTS
−
||Postdoc
+
! style="width:20%" !|Status
−
||DOCK development, HIVgp41
 
−
||2011 - present
 
−
|}
 
−
 
 
−
== FORMER MEMBERS ==
 
−
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
−
|- style="background:lightgreen"
 
−
! style="width 40%" !|Name
 
−
! style="width:20%" !|E-mail
 
−
! style="width:10%" !|Status
 
 
! style="width:20%" !|Project
 
! style="width:20%" !|Project
 
! style="width:10%" !|Year
 
! style="width:10%" !|Year
 +
! style="width:20%" !|Position
 
|-
 
|-
−
| Rashi Goyal
+
|[http://ringo.ams.sunysb.edu/~lprentis/ Lauren Prentis]
−
||[[Image:Rashi.email.png]]
+
||Graduate Student
−
||graduate student
+
||Tsg101, de novo design, covalent docking, genetic algorithm
−
||Influenza/ HIV
+
||2016 - 2022
−
||2007 - 2010
+
||lauren.prentis [at] stonybrook [dot] edu
 +
|-
 +
|Yuchen Zhou
 +
||PhD / Masters
 +
||BoNT/E, DOCK scoring functions, FABP5
 +
||2012 - 2018
 +
|| Postdoc, [http://filizolalab.org/ Filizola Lab] at [https://icahn.mssm.edu/ ISMMS]
 +
|-
 +
|Jiaye Guo
 +
||PhD
 +
||Solvated footprints, Small-molecule inhibitor for HER2
 +
||2013 - 2018
 +
|| Postdoctoral, [http://www.choderalab.org/ Chodera Lab] at [https://www.mskcc.org/ MSKCC]
 
|-
 
|-
−
|Brian McGillick
+
|Courtney Singleton
−
||[[Image:Brian.email.png]]
+
||MD / PhD
−
||graduate student
+
||HIVgp41, De novo design, genetic algorithm
−
||HIVgp41
+
||2014 - 2018
−
||2007 - 2010
+
||Stony Brook Medical School
 
|-
 
|-
−
|Kenneth Ascher
+
|Brian Fochtman
−
| NA
+
||PhD
−
|undergraduate student
+
||HIVgp41, DOCK development
−
| NA
+
||2011 - 2017
−
|2009 - 2010
+
||The FDA
 
|-
 
|-
−
|Dimir Abrar
+
|Lingling Jiang
−
| NA
+
||PhD
−
|undergraduate student
+
||HIVgp41, Pharmacophore modeling
−
| NA
+
||2010 - 2015
−
|2008-2009
+
||Novo Nordisk
 
|-
 
|-
−
|Chetan Raj Rupakheti
+
|Yulin Huang
−
| NA
+
||PhD
−
|summer student
+
||EGFR, IGF-IR
−
| NA
+
||2008 - 2013
−
|2008
+
||Wall Street
 
|-
 
|-
−
|Bentley Strockbine
+
|Sudipto Mukherjee
−
| NA
+
||PhD / Masters
−
|postdoctoral 
+
||DOCK development, HIVgp41
−
| HIVgp41  
+
||2005 - 2012
−
|2005 - 2007
+
||Postdoc, [http://www.voelzlab.org/ Voelz Lab]
 
|-
 
|-
−
|Noel Carrascal
+
|[http://docking.org/~tbalius/ Trent E. Balius]
−
| NA
+
||PhD
−
|graduate student
+
||EGFR, HIVgp41, DOCK development
−
| NA
+
||2007 - 2012
−
|2005 - 2007
+
||Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the [https://frederick.cancer.gov/ Frederick National Lab for Cancer Research]
 
|-
 
|-
−
|Ricky Chachra
+
| Noel Carrascal
−
| NA
+
||PhD (co-advisor)
−
|undergraduate student
+
||DOCK method development
−
| NA
+
||2005 - 2007
−
|2005 - 2007  
+
|| --
 
|-
 
|-
−
|Amee Patel
+
|- style="background:Yellow"
−
| NA
+
! style="width:20%" !|FORMER MASTERS STUDENTS
−
|undergraduate student
+
! style="width:20%" !|Status
−
| NA
+
! style="width:20%" !|Project
−
|2005 - 2007
+
! style="width:10%" !|Year
 +
! style="width:20%" !|Position
 
|-
 
|-
−
|-  
+
|Stephen Telehany
−
|}
+
||Masters
−
 
+
||Zika Virus
−
== ROTATION STUDENTS ==
+
||2017 - 2020
−
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
+
|| --
−
|- style="background:orange"
+
|-
−
! style="width:40%" !|Name
+
|Patrick Holden
−
! style="width:50%" !|Program
+
||Masters
 +
||HIVgp41
 +
||2009 - 2011
 +
|| --
 +
|-
 +
| Rashi Goyal
 +
||Masters
 +
||Influenza, HIV
 +
||2007 - 2010
 +
|| --
 +
|-
 +
| Brian McGillick
 +
||Masters
 +
||HIVgp41
 +
||2007 - 2010
 +
|| --
 
|-
 
|-
−
||Alvin Acerbo||Biochemistry and Struct. Biology
+
|- style="background:lightSalmon"
 +
! style="width:20%" !|FORMER UNDERGRADUATE STUDENTS
 +
! style="width:20%" !|Status
 +
! style="width:20%" !|Project
 +
! style="width:10%" !|Year
 +
! style="width:20%" !|Position
 
|-
 
|-
−
||Jeremy Adler||Medical Scientist MD/PhD
+
|Rodger Tan
−
|-  
+
||Undergraduate
−
||Ronald Chiu||Biology
+
||Test Set, benchmarking, de novo design
 +
||2019 - 2020
 +
|| --
 
|-
 
|-
−
||Roberto Colson||Applied Math & Stat
+
|Scott Laverty
 +
||Undergraduate
 +
||DOCK6 benchmarking with Autodock4
 +
||2019 - 2020
 +
||UPenn Chemistry Doctoral Program
 
|-
 
|-
−
||Ji Han||Applied Math & Stat
+
|Brian Ralph
 +
||Undergraduate
 +
||Fatty acid binding protein, De novo design
 +
||2013 - 2015
 +
||Dental school
 
|-
 
|-
−
||Zhuying Huang||Applied Math & Stat
+
| Jibril Ashiru-Balogun
 +
||Undergraduate
 +
||HIVgp41
 +
||2010 - 2011
 +
|| --
 
|-
 
|-
−
||Dongyung Kim||Applied Math & Stat
+
| Brian Shea
 +
||Undergraduate
 +
||Kinases
 +
||2010
 +
|| --
 
|-
 
|-
−
||Noha Lim||Applied Math & Stat
+
| Patrick Murphy
 +
||Undergraduate
 +
||Influenza
 +
||2009 - 2010
 +
|| --
 
|-
 
|-
−
||Christopher N. J. Marai||Biochem. and Struct. Bio.
+
| Kenneth Ascher
 +
||Undergraduate
 +
||DOCK method development
 +
||2009 - 2010
 +
|| --
 
|-
 
|-
−
||Vadim Patsalo||Applied Math & Stat
+
| Dimir Abrar
 +
||Undergraduate
 +
||HIVRT crossdocking
 +
||2008 - 2009
 +
|| --
 
|-
 
|-
−
||Shou-Chiang Peng||Applied Math & Stat
+
| Chetan Raj Rupakheti
 +
||Summer
 +
||HIVgp41
 +
||2008
 +
|| --
 
|-
 
|-
−
||Jerry Shipman||Biomedical Engineering
+
| Ricky Chachra
 +
||Undergraduate
 +
||Influenza drug resistance
 +
||2005 - 2007
 +
|| --
 
|-
 
|-
−
||Jie Wu||Applied Math & Stat
+
| Amee Patel
 +
||Undergraduate
 +
||Testset development
 +
||2005 - 2007
 +
|| --
 
|-
 
|-
−
||Navamita Ray||Applied Math & Stat
+
|- style="background:Hotpink"
 +
! style="width:20%" !|FORMER HIGH SCHOOL STUDENTS
 +
! style="width:20%" !|Status
 +
! style="width:20%" !|Project
 +
! style="width:10%" !|Year
 +
! style="width:20%" !|Position
 
|-
 
|-
−
||Eric||Applied Math & Stat
+
| Arya Glenn
 +
||High School Student
 +
||Alzheimer’s disease
 +
||2019 - 2020
 +
|| --
 
|-
 
|-
 
|}
 
|}

Latest revision as of 12:56, 18 September 2024

CONTACT

Robert C. Rizzo

Stony Brook University

Department of Applied Mathematics and Statistics

Office: Math Tower 1-111

Lab: Math Tower 3-129

Stony Brook, NY 11794-3600

Email: rizzorc [at] gmail [dot] com

Office: (631) 632-9340

Lab: (631) 632-8519

Fax: (631) 632-8490

Website: https://ringo.ams.stonybrook.edu/~rizzo

Wiki: ringo.ams.sunysb.edu


Current 2019 Rizzo Lab Members: from left to right Stephen, Guilherme, Rodger, Rob, Chris, John, Scott, and Lauren

RIZZO LAB

CURRENT MEMBERS Status Project Year Email
Dr. Robert C. Rizzo Principal Investigator Group leader 2004 - present rizzorc [at] gmail [dot] com


John Bickel Graduate Student de novo design, COVID-19, genetic algorithm, refinement 2019 - present john.bickel [at] stonybrook [dot] edu
Christopher Corbo Graduate Student Test Set benchmarking, COVID-19 2019 - present christopher.corbo [at] stonybrook [dot] edu
Steven Pak Graduate Student de novo design, FGFR2, Cheminformatics 2020 - present steven.pak [at] stonybrook [dot] edu
Brock Boysan Graduate Student refinement 2022 - present brock.boysan [at] stonybrook [dot] edu
Evan Spector Masters Student de novo design 2024 - present evan.spector [at] stonybrook [dot] edu
FORMER POSTDOCS Status Project Year Position
Guilherme Duarte Ramos Matos Postdoctoral Cheminformatics integration, COVID-19 2019 - 2021 Guilherme.duarteramosmatos [at] stonybrook [dot] edu
Dwight McGee Postdoctoral HIVgp41, Free energy calculations, de novo design 2015 - 2018 Silicon Therapeutics
William J. Allen Postdoctoral HIVgp41, DOCK development 2011 - 2015 TACC
Bentley Strockbine Postdoctoral HIVgp41 2005 - 2007 --
FORMER PHD STUDENTS Status Project Year Position
Lauren Prentis Graduate Student Tsg101, de novo design, covalent docking, genetic algorithm 2016 - 2022 lauren.prentis [at] stonybrook [dot] edu
Yuchen Zhou PhD / Masters BoNT/E, DOCK scoring functions, FABP5 2012 - 2018 Postdoc, Filizola Lab at ISMMS
Jiaye Guo PhD Solvated footprints, Small-molecule inhibitor for HER2 2013 - 2018 Postdoctoral, Chodera Lab at MSKCC
Courtney Singleton MD / PhD HIVgp41, De novo design, genetic algorithm 2014 - 2018 Stony Brook Medical School
Brian Fochtman PhD HIVgp41, DOCK development 2011 - 2017 The FDA
Lingling Jiang PhD HIVgp41, Pharmacophore modeling 2010 - 2015 Novo Nordisk
Yulin Huang PhD EGFR, IGF-IR 2008 - 2013 Wall Street
Sudipto Mukherjee PhD / Masters DOCK development, HIVgp41 2005 - 2012 Postdoc, Voelz Lab
Trent E. Balius PhD EGFR, HIVgp41, DOCK development 2007 - 2012 Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the Frederick National Lab for Cancer Research
Noel Carrascal PhD (co-advisor) DOCK method development 2005 - 2007 --
FORMER MASTERS STUDENTS Status Project Year Position
Stephen Telehany Masters Zika Virus 2017 - 2020 --
Patrick Holden Masters HIVgp41 2009 - 2011 --
Rashi Goyal Masters Influenza, HIV 2007 - 2010 --
Brian McGillick Masters HIVgp41 2007 - 2010 --
FORMER UNDERGRADUATE STUDENTS Status Project Year Position
Rodger Tan Undergraduate Test Set, benchmarking, de novo design 2019 - 2020 --
Scott Laverty Undergraduate DOCK6 benchmarking with Autodock4 2019 - 2020 UPenn Chemistry Doctoral Program
Brian Ralph Undergraduate Fatty acid binding protein, De novo design 2013 - 2015 Dental school
Jibril Ashiru-Balogun Undergraduate HIVgp41 2010 - 2011 --
Brian Shea Undergraduate Kinases 2010 --
Patrick Murphy Undergraduate Influenza 2009 - 2010 --
Kenneth Ascher Undergraduate DOCK method development 2009 - 2010 --
Dimir Abrar Undergraduate HIVRT crossdocking 2008 - 2009 --
Chetan Raj Rupakheti Summer HIVgp41 2008 --
Ricky Chachra Undergraduate Influenza drug resistance 2005 - 2007 --
Amee Patel Undergraduate Testset development 2005 - 2007 --
FORMER HIGH SCHOOL STUDENTS Status Project Year Position
Arya Glenn High School Student Alzheimer’s disease 2019 - 2020 --
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