Difference between revisions of "2012-2013 AMS-532 Fall-Spring"

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(→‎Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
 
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{| align="center" border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:95%"
 
|- style="background:lightblue"
 
|- style="background:lightblue"
−
| '''2011 Fall
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| '''2012 Fall
 
| '''Participant'''  
 
| '''Participant'''  
 
| '''Rotations or Research Group'''
 
| '''Rotations or Research Group'''
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|-
 
|-
  
−
| 2011.09.05 || -- || -- || -- || --
+
| 2012.09.05 || Zhou, Yuchen || Rizzo || Topic || Armstrong, MS., et al., ElectroShape: fast molecular similarity calculations incorporating shape, chirality and electrostatics. ''J Comput Aided Mol Des.'' '''2010 Sep''', ''24(9)'', 789-801.
 
|-
 
|-
  
−
| 2011.09.12 || -- || -- || -- || --
+
| 2012.09.12 || Chen, Jeffrey || MacCarthy || Topic || Hershberg, U., et al., Differences in potential for amino acid change after mutation reveals distinct strategies for κ and λ light-chain variation. ''PNAS'' '''2006 Oct''', ''vol. 103 no. 43'', 15963-15968.
 
|-
 
|-
  
−
| 2011.09.19 || -- || -- || -- || --
+
| 2012.09.19 || Sin, Jeewoen || MacCarthy || Topic || Leclerc, RD., Survival of the sparsest: robust gene networks are parsimonious. ''Mol Syst Biol.'' '''2008''' ''4:213''.
 
|-
 
|-
  
−
| 2011.09.26 || -- || -- || --|| --
+
| 2012.09.26 || Krantsevich, Nikolay || Rizzo || Topic|| Barrciro, G., et al., From Docking False-Positive to Active Anti-HIV Agent. ''J. Med. Chem.'' '''2007''', ''50'', 5324-5329.
 
|-
 
|-
  
−
| 2011.10.03 || -- || -- || -- || --
+
| 2012.10.03 || -- || -- || Postponed || AMS Graduate Party
 
|-
 
|-
  
−
| 2011.10.10 || -- || -- || -- || --
+
| 2012.10.10 || Li, Xindi || Rizzo || Topic || Chang, C., et al., Pharmacophore-based discovery of ligands for drug transporters. ''Adv Drug Deliv Rev.'' '''2006 Nov''', ''58(12-13)'', 1431-1450.
 
|-
 
|-
  
−
| 2011.10.17 || -- || -- || -- || --
+
| 2012.10.17 || Krantsevich, Artyom || MacCarthy || Topic || MacCarthy, T., et al., Differential regulation drives plasticity in sex determination gene networks. ''BMC Evolutionary Biology.'' '''2010''' ''10:388''.
 
|-
 
|-
  
−
| 2011.10.25 || -- || -- || -- || --
+
| 2012.10.25 || Yuan, Chaohui || MacCarthy || Topic || Cohen, RM., Somatic hypermutation targeting is influenced by location within the immunoglobulin V region. ''Molecular Immunology'' '''2011''', ''48'', 1477-1483.
 
|-
 
|-
  
−
| 2011.10.31 || -- || -- || -- || --
+
| 2012.10.31 || -- || -- || -- || No Class: Hurricane Sandy
 
|-
 
|-
  
−
| 2011.11.07 || -- || -- || -- || --
+
| 2012.11.07 || -- || -- || Group Study || Test Preparation for AMS 535
 
|-
 
|-
  
−
| 2011.11.14 || -- || -- || -- || --
+
| 2012.11.14 || Li, Xindi and Yuan, Chaohui || -- || Topic || FIRST ROTATION/RESEARCH PRESENTATIONS
 
|-
 
|-
  
−
| 2011.11.21 || - || -- || -- || THANKSGIVING BREAK
+
| 2012.11.21 || - || -- || -- || THANKSGIVING BREAK
 
|-
 
|-
  
−
| 2011.11.28 || -- || -- || -- || --
+
| 2012.11.28 || -- || -- || Group Study || Test Preparation for AMS 535
 
|-
 
|-
−
| 2011.12.05 (last class) || -- || -- || -- || --
+
| 2012.12.05 (last class) || -- || -- || Group Study || Test Preparation for AMS 535
 
|-
 
|-
 +
|- style="background:lightgreen"
 +
| '''2013 Spring'''
 +
| '''Participant'''
 +
| '''Rotations or Research Group'''
 +
| '''Topic'''
 +
| '''References
 +
SEMESTER STARTS WITH RESPONSIBLE CONDUCT OF RESEARCH'''
 +
|-
 +
 +
 +
| 2013.01.30 || Guo, Jiaye || Boon || Topic || Henares, BM., et al., Discovery of a Nitric Oxide Responsive Quorum Sensing Circuit in ''Vibrio harveyi''. ''ACS Chem. Biol.'', '''2012''', ''7(8)'', 1331-1336.
 +
|-
 +
 +
 +
| 2013.02.06 || Krantsevich, Nikolay, Krantsevich, Artyom, and Shan, Jiahui|| -- || Topic || FIRST ROTATION/RESEARCH PRESENTATIONS
 +
|-
 +
 +
 +
| 2013.02.13 || Yuan, Chaohui, Li, Xindi, and Guo, Jiaye || -- || Topic || SECOND ROTATION/RESEARCH PRESENTATIONS
 +
|-
 +
 +
 +
| 2013.02.20 || Krantsevich, Nikolay, Krantsevich, Artyom, and Amgalan, Anar || -- || Topic || SECOND ROTATION/RESEARCH PRESENTATIONS
 +
|-
 +
 +
 +
| 2013.02.27 || Chen, Ye || MacCarthy || Topic || Liu, M., et al., Two levels of protection for the B cell genome during somatic hypermutation. ''Nature'', '''451''', 841-845.
 +
|-
 +
 +
 +
| 2013.03.06 || Yuan, Chaohui || Green || Topic || Green, DF., A Statistical Framework for Hierarchical Methods in Molecular Simulation and Design. ''J. Chem. Theory Comput.'', '''2010''', ''6(5)'', 1682–1697.
 +
|-
 +
 +
 +
| 2013.03.13 || Krantsevich, Nikolay || Shatz || Topic || Koren, S., et al., Hybrid error correction and de novo assembly of single-molecule sequencing reads. ''Nature Biology'', '''30''', 693–700
 +
|-
 +
 +
 +
| 2013.03.20 || Spring Break || Spring Break || Spring Break || Spring Break
 +
|-
 +
 +
 +
| 2013.03.27 || Krantsevich, Artyom || -- || -- || --
 +
|-
 +
 +
 +
| 2013.04.03 || Li, Xindi || -- || -- || --
 +
|-
 +
 +
 +
| 2013.04.10 || Guo, Jiaye || -- || -- || --
 +
|-
 +
 +
 +
| 2013.04.17 || Chen, Ye || -- || -- || --
 +
|-
 +
 +
 +
| 2013.04.24 || -- || -- || -- || --
 +
|-
 +
 +
 +
| 2013.05.01 || -- || -- || -- || --
 +
|-
 +
 +
 +
| 2013.05.08 (last class) || -- || -- || -- || --
 +
|-
 +
|}

Latest revision as of 16:11, 23 January 2014

Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring)

2012 Fall Participant Rotations or Research Group Topic References

REFERENCES SHOULD USE J. AM. CHEM. SOC. FORMAT

2012.08.29 -- -- -- --
2012.09.05 Zhou, Yuchen Rizzo Topic Armstrong, MS., et al., ElectroShape: fast molecular similarity calculations incorporating shape, chirality and electrostatics. J Comput Aided Mol Des. 2010 Sep, 24(9), 789-801.
2012.09.12 Chen, Jeffrey MacCarthy Topic Hershberg, U., et al., Differences in potential for amino acid change after mutation reveals distinct strategies for κ and λ light-chain variation. PNAS 2006 Oct, vol. 103 no. 43, 15963-15968.
2012.09.19 Sin, Jeewoen MacCarthy Topic Leclerc, RD., Survival of the sparsest: robust gene networks are parsimonious. Mol Syst Biol. 2008 4:213.
2012.09.26 Krantsevich, Nikolay Rizzo Topic Barrciro, G., et al., From Docking False-Positive to Active Anti-HIV Agent. J. Med. Chem. 2007, 50, 5324-5329.
2012.10.03 -- -- Postponed AMS Graduate Party
2012.10.10 Li, Xindi Rizzo Topic Chang, C., et al., Pharmacophore-based discovery of ligands for drug transporters. Adv Drug Deliv Rev. 2006 Nov, 58(12-13), 1431-1450.
2012.10.17 Krantsevich, Artyom MacCarthy Topic MacCarthy, T., et al., Differential regulation drives plasticity in sex determination gene networks. BMC Evolutionary Biology. 2010 10:388.
2012.10.25 Yuan, Chaohui MacCarthy Topic Cohen, RM., Somatic hypermutation targeting is influenced by location within the immunoglobulin V region. Molecular Immunology 2011, 48, 1477-1483.
2012.10.31 -- -- -- No Class: Hurricane Sandy
2012.11.07 -- -- Group Study Test Preparation for AMS 535
2012.11.14 Li, Xindi and Yuan, Chaohui -- Topic FIRST ROTATION/RESEARCH PRESENTATIONS
2012.11.21 - -- -- THANKSGIVING BREAK
2012.11.28 -- -- Group Study Test Preparation for AMS 535
2012.12.05 (last class) -- -- Group Study Test Preparation for AMS 535
2013 Spring Participant Rotations or Research Group Topic References

SEMESTER STARTS WITH RESPONSIBLE CONDUCT OF RESEARCH

2013.01.30 Guo, Jiaye Boon Topic Henares, BM., et al., Discovery of a Nitric Oxide Responsive Quorum Sensing Circuit in Vibrio harveyi. ACS Chem. Biol., 2012, 7(8), 1331-1336.
2013.02.06 Krantsevich, Nikolay, Krantsevich, Artyom, and Shan, Jiahui -- Topic FIRST ROTATION/RESEARCH PRESENTATIONS
2013.02.13 Yuan, Chaohui, Li, Xindi, and Guo, Jiaye -- Topic SECOND ROTATION/RESEARCH PRESENTATIONS
2013.02.20 Krantsevich, Nikolay, Krantsevich, Artyom, and Amgalan, Anar -- Topic SECOND ROTATION/RESEARCH PRESENTATIONS
2013.02.27 Chen, Ye MacCarthy Topic Liu, M., et al., Two levels of protection for the B cell genome during somatic hypermutation. Nature, 451, 841-845.
2013.03.06 Yuan, Chaohui Green Topic Green, DF., A Statistical Framework for Hierarchical Methods in Molecular Simulation and Design. J. Chem. Theory Comput., 2010, 6(5), 1682–1697.
2013.03.13 Krantsevich, Nikolay Shatz Topic Koren, S., et al., Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biology, 30, 693–700
2013.03.20 Spring Break Spring Break Spring Break Spring Break
2013.03.27 Krantsevich, Artyom -- -- --
2013.04.03 Li, Xindi -- -- --
2013.04.10 Guo, Jiaye -- -- --
2013.04.17 Chen, Ye -- -- --
2013.04.24 -- -- -- --
2013.05.01 -- -- -- --
2013.05.08 (last class) -- -- -- --
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