Difference between revisions of "DOCK GA Development Goals"
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|Manual user-defined mutation type ||conf_gen_ga || LEP || Yes | |Manual user-defined mutation type ||conf_gen_ga || LEP || Yes | ||
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| − | |Remove check only option || conf_gen_ga || LEP || | + | |Remove check only option || conf_gen_ga || LEP || Yes |
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Revision as of 11:15, 16 February 2019
| Tasks | src | Owner | Complete? |
|---|---|---|---|
| Fix bug that collapsed atom coordinates | everywhere? nowhere? | everyone | No |
| Added Delimeter header | conf_gen_ga | LEP | Yes |
| Fix xover only feature | conf_gen_ga | LEP | Yes |
| Put in error messages for mut_rate > 1 | conf_gen_ga | LEP | Yes |
| Manual user-defined mutation type | conf_gen_ga | LEP | Yes |
| Remove check only option | conf_gen_ga | LEP | Yes |
To Do List
-xover- -guided based on score 1. good v good 2. bad v good 3. bad v bad -nonexhaustive xover (pick subset of xover based on probability) -2-3 point xover at once -adaptive maintenance ensemble based on ensemble convergence -bring in new parents based on convergence -Mutations- -adaptive mutation rate -pick location of mutation based on something -pick mutation type based on behavior of esemble too large boost deletion too small more add change ...boost replace/sub -mutation type selection based on probability vs ensemble -complete x # y mutation so far so less prevalent etc -3 layer subs do no work so don't do them -replace > 1 segment -fitness- -turn on and off niching adaptive/extinction -reduce boost of fragments and all poor mols with niching -pareto/mulitobjective ga -selection- -metropolis selection for tournament/roulette -adaptive keep #p and #o -extinction- -automated vs on convergence -stop- -convergence -which molecules are best- -best first pruning - now uses descriptor score even if niching ned to delta to fitness/niching when used
