Difference between revisions of "2021 Denovo tutorial 3 with PDBID 1S19"

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(I. Focused De Novo Design)
(Focused Denovo Design with PDB 1S19)
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= Focused Denovo Design with PDB 1S19 =
 
= Focused Denovo Design with PDB 1S19 =
  
In this section, we will generate new ligand structures using a fragment library. We will then
+
In this section, we will generate new ligand structures using a fragment library. It will require the use of some of the output files from the Virtual Screen tutorial (found [https://ringo.ams.stonybrook.edu/index.php/2021_DOCK_tutorial_3_with_PDBID_1S19 here]).
  
 
===Fragment Libraries===
 
===Fragment Libraries===

Revision as of 15:06, 8 March 2021

This tutorial continues where we left off from the virtual screening of 1S19, a structure of the vitamin D nuclear receptor bound to the side chain analogue calcipotriol.

Focused Denovo Design with PDB 1S19

In this section, we will generate new ligand structures using a fragment library. It will require the use of some of the output files from the Virtual Screen tutorial (found here).

Fragment Libraries

Focused Denovo Growth

Focused Denovo Rescore

Generic Denovo Design with PDB 1S19