Difference between revisions of "2023 AMBER tutorial 2 with PDBID 3WZE"

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=="Tleap"==
+
=='''Tleap'''==
  
  
=="Equilibration"==
+
=='''Equilibration'''==
  
  
=="Production"==
+
=='''Production'''==
  
  
=="MD Analysis"==
+
=='''MD Analysis'''==
  
  
==="RMSD"===
+
==='''RMSD'''===
  
  
==="Hydrogen Bonding"===
+
==='''Hydrogen Bonding'''===
  
  
==="MM-GBSA"===
+
==='''MM-GBSA'''===

Revision as of 12:37, 26 March 2023

Introduction

Directory Setup

3WZE Structures

"Receptor"

"Ligand"

Amber Simulation Parameters

Tleap

Equilibration

Production

MD Analysis

RMSD

Hydrogen Bonding

MM-GBSA