Difference between revisions of "VMD"
From Rizzo_Lab
| Line 13: | Line 13: | ||
"within <distance> of <selection>" | "within <distance> of <selection>" | ||
"same <property> as <selection>" | "same <property> as <selection>" | ||
| − | + | same resid as within 5 of resname LIG | |
here is a script to calculate rmsd's: [[vmd.rmsd.csh]]. | here is a script to calculate rmsd's: [[vmd.rmsd.csh]]. | ||
Revision as of 11:01, 5 August 2009
A great resource is the user manual [1].
One can run scripts in VMD command line (example scripts).
To run a script (in windows) type source in the command line followed by the fill name.
Useful atom selection commands:
"within <distance> of <selection>" "same <property> as <selection>" same resid as within 5 of resname LIG
here is a script to calculate rmsd's: vmd.rmsd.csh.
