Difference between revisions of "2009-2010 AMS-532 Fall-Spring"

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(→‎Journal Club Participants, Topics, References, and Schedule)
(→‎Journal Club Participants, Topics, References, and Schedule)
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| 2009.11.04 || Hu, Yijing || Group|| Cell Migration|| Thomas P. Kole, Yiider Tseng, et al; Intracellular Mechanics of Migrating Fibroblasts. ''Molecular Biology of the Cell'' '''2005''', ''16'', 328-338.
 
| 2009.11.04 || Hu, Yijing || Group|| Cell Migration|| Thomas P. Kole, Yiider Tseng, et al; Intracellular Mechanics of Migrating Fibroblasts. ''Molecular Biology of the Cell'' '''2005''', ''16'', 328-338.
 
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| 2009.11.11 || Balius, Trent || Rizzo Group || Clustering MD simulations || Shao, J., et al.; Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms. ''J. Chem. Theory Comput.'' '''2007''', ''3'', 2312-2334
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| 2009.11.11 || Balius, Trent || Rizzo Group || Clustering MD simulations || Shao, J., et al.; Clustering molecular dynamics trajectories: 1. Characterizing the Performance of Different Clustering Algorithms. ''J. Chem. Theory Comput.'' '''2007''', ''3'', 2312-2334.
 
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| 2009.11.18 || Song, Bowen || Zhu || Biostatistics || Joshi, T.; et al., Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. ''Int. J. Bioin. Res. and App.'' '''2006''', ''1'', 335-350.
 
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| 2009.00.00 || Kim, Seunglee || Group|| Topic|| Citation.
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| 2009.12.02 || Wong, Chia || Group|| Survival Analysis|| Akritas, M. G.; Nonparametric Survival Analysis. ''Stat. Sci.'' '''2004''', ''19'', 615-623.
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| 2009.00.00 || Song, Bowen || Group|| Topic|| Citation.
 
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| 2009.00.00 || Wong, Chia || Group|| Topic|| Citation.
 
 
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| 2009.12.09 || Vo, Emily || Green || Sugar Conformation || Auzanneau, F-I.; et al., Stochastic conformational search on the Lewis X (Le<sup>x</sup>) trisaccharide and three Le<sup>x</sup> analogues. ''Can. J. Chem.'' '''2002''', ''80'', 1088-1095.
 
| 2009.12.09 || Vo, Emily || Green || Sugar Conformation || Auzanneau, F-I.; et al., Stochastic conformational search on the Lewis X (Le<sup>x</sup>) trisaccharide and three Le<sup>x</sup> analogues. ''Can. J. Chem.'' '''2002''', ''80'', 1088-1095.
 
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|2009.00.00 || Zhou, Ji || Group|| Topic|| Citation.
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|2009.00.00 || Zhou, Ji || -- || -- || --
 
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| 2010.00.00 || Last, First|| Group|| Topic|| Citation.
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| 2010.01.27 || GRD 500 || -- || Introduction || No discussion.
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| 2010.02.03 || GRD 500 || -- || Scientific Misconduct|| Citation.
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| 2010.02.10 || GRD 500 || -- || Mentorship || Citation.
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| 2010.02.17 || GRD 500 || -- || Authorship || Citation.
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| 2010.02.24 || GRD 500 || -- || Plagiarism || Citation.
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| 2010.03.03 || GRD 500 || -- || Managing Data || Citation.
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| 2010.03.10 || GRD 500 || -- || Journalism || Citation.
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| 2010.03.17 || Last, First|| Group|| Topic|| Citation.
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| 2010.03.24 || Last, First|| Group|| Topic|| Citation.
 
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| 2010.00.00 || Last, First|| Group|| Topic|| Citation.
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| 2010.03.31 || -- || -- || -- || Spring Break.
 
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| 2010.00.00 || Last, First|| Group|| Topic|| Citation.
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| 2010.04.07 || Last, First|| Group|| Topic|| Citation.
 
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| 2010.00.00 || Last, First|| Group|| Topic|| Citation.
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| 2010.04.14 || Last, First|| Group|| Topic|| Citation.
 
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| 2010.00.00 || Last, First|| Group|| Topic|| Citation.
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| 2010.04.21 || Last, First|| Group|| Topic|| Citation.
 
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| 2010.00.00 || Last, First|| Group|| Topic|| Citation.
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| 2010.04.28 || Last, First|| Group|| Topic|| Citation.
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| 2010.05.05 || Last, First|| Group|| Topic|| Citation.
 
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Revision as of 15:06, 10 March 2010

Journal Club Participants, Topics, References, and Schedule

Note: Each participant please update the Wiki as required


2009 Fall Participant Rotations or Research Group Topic References

NEED TO UPDATE ALL REFERENCES WITH CORRECT CITATIONS USING JACS FORMAT

2009.00.00 Jackson, Michael Jones Example Citation Altman, M. D.; et al., HIV-1 protease inhibitors from inverse design in the substrate envelope exhibit subnanomolar binding to drug-resistant variants. J Am Chem Soc 2008, 130, (19), 6099-113.
2009.09.09 Adler, Jeremy Entcheva modeling of neural behavior Global Structure, Robustness, and Modulation of Neuronal Models. J Neurosci. 2001 Jul 15;21(14):5229-38..
2009.09.23 Au, Loretta Green Protein Design Taylor, M. S.; et al., Mutations affecting the oligomerization interface of G-protein-coupled receptors revealed by a novel de novo protein design framework. Biophys J 2008, 94, (7), 2470-2481.
2009.09.30 Brody, Dustin Green Gene Regulatory Networks Pomerance, A., et al; The effect of network topology on the stability of discrete state models of genetic control. PNAS 2009, 8209-8214.
2009.10.07 Chen, Yong Ahn Biostatistic A multiple testing procedure to associate gene expression levels with survival. Statist.Med. 2005,3077-3088.
2009.10.14 Falk, Adam Green Protein Design Havranek, J.J.; Baker, D., Motif-directed flexible backbone design of functional interactions. Protein Science 2009, 18, 1293-1305.
2009.10.21 Guan, Xinyu Group Topic Tsai, TY., et al; Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science. 2008,321(5885):126-9.
2009.10.28 Jiang, Lingling Group Pharmacophore modelling Gerhard Wolver, Thierry Langer; LigandScout: 3-D Pharmacophores Derived from Protein-Bound Ligands and Their Use as Virtual Screening Filters. J.chem. Inf. Model. 2005, 45, 160-169.
2009.11.04 Hu, Yijing Group Cell Migration Thomas P. Kole, Yiider Tseng, et al; Intracellular Mechanics of Migrating Fibroblasts. Molecular Biology of the Cell 2005, 16, 328-338.
2009.11.11 Balius, Trent Rizzo Group Clustering MD simulations Shao, J., et al.; Clustering molecular dynamics trajectories: 1. Characterizing the Performance of Different Clustering Algorithms. J. Chem. Theory Comput. 2007, 3, 2312-2334.
2009.11.18 Song, Bowen Zhu Biostatistics Joshi, T.; et al., Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. Int. J. Bioin. Res. and App. 2006, 1, 335-350.
2009.12.02 Wong, Chia Group Survival Analysis Akritas, M. G.; Nonparametric Survival Analysis. Stat. Sci. 2004, 19, 615-623.
2009.12.09 Vo, Emily Green Sugar Conformation Auzanneau, F-I.; et al., Stochastic conformational search on the Lewis X (Lex) trisaccharide and three Lex analogues. Can. J. Chem. 2002, 80, 1088-1095.
2009.00.00 Zhou, Ji -- -- --
2010 Spring Participant Rotations or Research Group Topic References

NEED TO UPDATE ALL REFERENCES WITH CORRECT CITATIONS USING JACS FORMAT

2010.01.27 GRD 500 -- Introduction No discussion.
2010.02.03 GRD 500 -- Scientific Misconduct Citation.
2010.02.10 GRD 500 -- Mentorship Citation.
2010.02.17 GRD 500 -- Authorship Citation.
2010.02.24 GRD 500 -- Plagiarism Citation.
2010.03.03 GRD 500 -- Managing Data Citation.
2010.03.10 GRD 500 -- Journalism Citation.
2010.03.17 Last, First Group Topic Citation.
2010.03.24 Last, First Group Topic Citation.
2010.03.31 -- -- -- Spring Break.
2010.04.07 Last, First Group Topic Citation.
2010.04.14 Last, First Group Topic Citation.
2010.04.21 Last, First Group Topic Citation.
2010.04.28 Last, First Group Topic Citation.
2010.05.05 Last, First Group Topic Citation.
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