Difference between revisions of "DOCK GIST Parameters"
From Rizzo_Lab
| Line 10: | Line 10: | ||
|- | |- | ||
| gist_score_primary/descriptor_use_gist | | gist_score_primary/descriptor_use_gist | ||
| − | | | + | | Turn on gist score either alone or through descriptor score |
| | | | ||
|- | |- | ||
|gist_score_att_exp | |gist_score_att_exp | ||
| − | |The | + | |The attractive exponent in the Lennard-Jones potential |
|6 | |6 | ||
|- | |- | ||
|gist_score_rep_exp | |gist_score_rep_exp | ||
| − | |The | + | |The repulsive exponent in the Lennard-Jones potential |
|12 | |12 | ||
|- | |- | ||
| Line 26: | Line 26: | ||
|- | |- | ||
|gist_score_gist_type | |gist_score_gist_type | ||
| − | |The | + | |The type of gist (trilinear or displace). For single point calculations displacement (Full GIST) can be used. When doing on the fly docking it is suggested to use trilinear (Fuzzy/Blurry GIST) as it is faster. |
|trilinear | |trilinear | ||
|- | |- | ||
|gist_score_grid_file | |gist_score_grid_file | ||
| − | |The path to the | + | |The path to the gist grid |
|grid.dx | |grid.dx | ||
|- | |- | ||
|gist_score_Hydrogen_grid_file | |gist_score_Hydrogen_grid_file | ||
| − | |The path to the | + | |The path to the hydrogen grid |
|grid_h.dx | |grid_h.dx | ||
Revision as of 10:08, 20 May 2019
| Parameter | Description | Default |
|---|---|---|
| conformer_search_type | Choose between rigid, flex, covalent, denovo, genetic, HDB | Flex |
| gist_score_primary/descriptor_use_gist | Turn on gist score either alone or through descriptor score | |
| gist_score_att_exp | The attractive exponent in the Lennard-Jones potential | 6 |
| gist_score_rep_exp | The repulsive exponent in the Lennard-Jones potential | 12 |
| gist_score_gist_scale | The path to the fragment library for just linkers | (-1) |
| gist_score_gist_type | The type of gist (trilinear or displace). For single point calculations displacement (Full GIST) can be used. When doing on the fly docking it is suggested to use trilinear (Fuzzy/Blurry GIST) as it is faster. | trilinear |
| gist_score_grid_file | The path to the gist grid | grid.dx |
| gist_score_Hydrogen_grid_file | The path to the hydrogen grid | grid_h.dx |
