Difference between revisions of "Analysis Tools Repository"
From Rizzo_Lab
m (→What is here) |
(→Using this repository) |
||
| Line 13: | Line 13: | ||
= Using this repository = | = Using this repository = | ||
| − | === What is this repository?=== | + | ===What is this repository?=== |
| − | ===How to update this repository === | + | ===How to update this repository=== |
| + | |||
| + | ===How to add new analysis/what should each entry contain=== | ||
| + | |||
| + | 1) A brief description of what the tool/function/set of scripts does and what it would be used for. | ||
| + | |||
| + | 2) How the scripts or tools are utilized, any caveats with the scripts as they're written | ||
| + | |||
| + | 3) An example figure of what the output should yield. | ||
| + | |||
| + | 4) A link to the necessary scripts or code on the Rizzo Lab Github. | ||
= Analyses = | = Analyses = | ||
Revision as of 09:10, 15 January 2020
This is intended to be the one-stop-shop for analysis tools and scripts for the lab.
See below for the intended list of things to be added (LastAdded: 01/07/2020 JDB)
- MMGBSA - execution and analysis
- Footprinting with amber
- Multifootprint with dock
- ACF - BASEM
- Making 2D structures (JMOL, MarvinSketch)
- Sequence alignments
- Test set statistics
- MOE inputs, descriptions, files, scripts?
Contents
Using this repository
What is this repository?
How to update this repository
How to add new analysis/what should each entry contain
1) A brief description of what the tool/function/set of scripts does and what it would be used for.
2) How the scripts or tools are utilized, any caveats with the scripts as they're written
3) An example figure of what the output should yield.
4) A link to the necessary scripts or code on the Rizzo Lab Github.
