Difference between revisions of "2020 AMBER tutorial with PDBID 3VJK"
From Rizzo_Lab
Stonybrook (talk | contribs) (→Build system with TLeap) |
Stonybrook (talk | contribs) (→Build system with TLeap) |
||
| Line 2: | Line 2: | ||
==Generating Parameters for the simulation== | ==Generating Parameters for the simulation== | ||
==Build system with TLeap== | ==Build system with TLeap== | ||
| + | [[File:3vjk_wet_10.jpg|thumb|center|800px]] | ||
https://ringo.ams.stonybrook.edu/images/5/54/3vjk_wet_10.jpg | https://ringo.ams.stonybrook.edu/images/5/54/3vjk_wet_10.jpg | ||
| + | [[File:3vjk_solvated_wet8.jpg|thumb|center|800px]] | ||
https://ringo.ams.stonybrook.edu/images/c/c2/3vjk_solvated_wet8.jpg | https://ringo.ams.stonybrook.edu/images/c/c2/3vjk_solvated_wet8.jpg | ||
Revision as of 11:12, 2 April 2020
In this tutorial, we will be modeling the dynamics of the ligand with the receptor using AMBER 16. Amber is a molecular dynamics simulation software package.
Generating Parameters for the simulation
Build system with TLeap
https://ringo.ams.stonybrook.edu/images/5/54/3vjk_wet_10.jpg
https://ringo.ams.stonybrook.edu/images/c/c2/3vjk_solvated_wet8.jpg
