Difference between revisions of "Rizzo Lab Downloads"

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(Added protein families list)
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|  Flexibility Subset Lists
 
|  Flexibility Subset Lists
 
|| [http://george.ams.sunysb.edu/SB2010/7orless.txt 7orless] [http://george.ams.sunysb.edu/SB2010/8to15.txt 8to15] [http://george.ams.sunysb.edu/SB2010/15+.txt 15+] [http://george.ams.sunysb.edu/SB2010/all.txt all]  
 
|| [http://george.ams.sunysb.edu/SB2010/7orless.txt 7orless] [http://george.ams.sunysb.edu/SB2010/8to15.txt 8to15] [http://george.ams.sunysb.edu/SB2010/15+.txt 15+] [http://george.ams.sunysb.edu/SB2010/all.txt all]  
 +
|}
 +
 +
 +
== SB2010 Protein Families [2010.05.19 Initial Release] ==
 +
 +
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:40%"
 +
|- style="background:lightblue; width:10%"
 +
! style="width:40%" !|Protein Family
 +
! style="width:10%" !|Size
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/REVERSE_TRANSCRIPTASE HIV RT]
 +
| 21
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/FACTOR_XA Factor Xa]
 +
| 41
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/NEURAMINIDASE Neuraminidase]
 +
| 43
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/SIALIDASE Sialidase]
 +
| 11
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/RIBONUCLEASE_T1 Ribonuclease T1]
 +
| 7
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/OMP_DECARBOXYLASE OMP Decarboxylase]
 +
| 7
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/ESTROGEN_RECEPTOR Estrogen Receptor]
 +
| 45
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/T4_LYSOZYME T4 Lysozyme]
 +
| 13
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/BETA-TRYPSIN Beta Trypsin]
 +
| 29
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/STREPTAVIDIN Streptavidin]
 +
| 8
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/THROMBIN Thrombin]
 +
| 37
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/TYROSINE_PHOSPHATASE Tyrosine Phosphatase]
 +
| 20
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/HMG_COA_REDUCTASE HMG COA Reductase]
 +
| 20
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/RIBONUCLEASE_A Ribonuclease A]
 +
| 14
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/TRYPSIN Alpha Trypsin]
 +
| 46
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/COX COX]
 +
| 7
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/ACETYLCHOLINESTERASE Acetylcholinesterase]
 +
| 19
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/HIV_PROTEASE HIV Protease]
 +
| 60
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/THERMOLYSIN Thermolysin]
 +
| 26
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/CARBOXYPEPTIDASE_A Carboxypeptidase A]
 +
| 8
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/MMP Matrix Metalloprotease]
 +
| 14
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/LYSOZYME Egg Lysozyme]
 +
| 14
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/PHOSPHOLIPASE_A2 Phospholipase A2]
 +
| 15
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/THYMIDYLATE_SYNTHASE Thymidylate Synthase]
 +
| 12
 +
|-
 +
| [http://george.ams.sunysb.edu/SB2010/families.large/CARBONIC_ANHYDRASE Carbonic Anhydrase]
 +
| 29
 
|}
 
|}
  
 
Please contact [[Image:Sudipto.email.png]] if you face any problems.
 
Please contact [[Image:Sudipto.email.png]] if you face any problems.

Revision as of 15:29, 20 July 2010

SB2010 Docking Database [2010.05.19 Initial Release]

Resource Filename
Receptors, Ligands and Spheres SB2010.05.19_rec.lig.sph.tar.gz
Energy and Bump Grids To be released
Alternate Ligand Charge Models To be released
Aligned Protein Families To be released
DOCK Sample Inputs RGD FAD FLX
Flexibility Subset Lists 7orless 8to15 15+ all


SB2010 Protein Families [2010.05.19 Initial Release]

Protein Family Size
HIV RT 21
Factor Xa 41
Neuraminidase 43
Sialidase 11
Ribonuclease T1 7
OMP Decarboxylase 7
Estrogen Receptor 45
T4 Lysozyme 13
Beta Trypsin 29
Streptavidin 8
Thrombin 37
Tyrosine Phosphatase 20
HMG COA Reductase 20
Ribonuclease A 14
Alpha Trypsin 46
COX 7
Acetylcholinesterase 19
HIV Protease 60
Thermolysin 26
Carboxypeptidase A 8
Matrix Metalloprotease 14
Egg Lysozyme 14
Phospholipase A2 15
Thymidylate Synthase 12
Carbonic Anhydrase 29

Please contact Sudipto.email.png if you face any problems.

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