2020 AMBER tutorial with PDBID 3VJK
From Rizzo_Lab
In this tutorial, we will be modeling the dynamics of the ligand with the receptor using AMBER 16. Amber is a molecular dynamics simulation software package.
Generating Parameters for the simulation
Build system with TLeap
https://ringo.ams.stonybrook.edu/images/5/54/3vjk_wet_10.jpg