2009-2010 AMS-532 Fall-Spring
From Rizzo_Lab
Journal Club Participants, Topics, References, and Schedule
Note: Each participant please update the Wiki as required
| 2009 Fall | Participant | Rotations or Research Group | Topic | References
NEED TO UPDATE ALL REFERENCES WITH CORRECT CITATIONS USING JACS FORMAT |
| 2009.09.09 | Adler, Jeremy | Entcheva | modeling of neural behavior | Global Structure, Robustness, and Modulation of Neuronal Models. J Neurosci. 2001 Jul 15;21(14):5229-38.. |
| 2009.09.23 | Au, Loretta | Green | Protein Design | Taylor, M. S.; et al., Mutations affecting the oligomerization interface of G-protein-coupled receptors revealed by a novel de novo protein design framework. Biophys J 2008, 94, (7), 2470-2481. |
| 2009.09.30 | Brody, Dustin | Green | Gene Regulatory Networks | Pomerance, A., et al; The effect of network topology on the stability of discrete state models of genetic control. PNAS 2009, 8209-8214. |
| 2009.10.07 | Chen, Yong | Ahn | Biostatistic | A multiple testing procedure to associate gene expression levels with survival. Statist.Med. 2005,3077-3088. |
| 2009.10.14 | Falk, Adam | Green | Protein Design | Havranek, J.J.; Baker, D., Motif-directed flexible backbone design of functional interactions. Protein Science 2009, 18, 1293-1305. |
| 2009.10.21 | Guan, Xinyu | Group | Topic | Tsai, TY., et al; Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science. 2008,321(5885):126-9. |
| 2009.10.28 | Jiang, Lingling | Group | Pharmacophore modelling | Gerhard Wolver, Thierry Langer; LigandScout: 3-D Pharmacophores Derived from Protein-Bound Ligands and Their Use as Virtual Screening Filters. J.chem. Inf. Model. 2005, 45, 160-169. |
| 2009.11.04 | Hu, Yijing | Group | Cell Migration | Thomas P. Kole, Yiider Tseng, et al; Intracellular Mechanics of Migrating Fibroblasts. Molecular Biology of the Cell 2005, 16, 328-338. |
| 2009.11.11 | Balius, Trent | Rizzo Group | Clustering MD simulations | Shao, J., et al.; Clustering molecular dynamics trajectories: 1. Characterizing the Performance of Different Clustering Algorithms. J. Chem. Theory Comput. 2007, 3, 2312-2334. |
| 2009.11.18 | Song, Bowen | Zhu | Biostatistics | Joshi, T.; et al., Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. Int. J. Bioin. Res. and App. 2006, 1, 335-350. |
| 2009.12.02 | Wong, Chia | Group | Survival Analysis | Akritas, M. G.; Nonparametric Survival Analysis. Stat. Sci. 2004, 19, 615-623. |
| 2009.12.09 | Vo, Emily | Green | Sugar Conformation | Auzanneau, F-I.; et al., Stochastic conformational search on the Lewis X (Lex) trisaccharide and three Lex analogues. Can. J. Chem. 2002, 80, 1088-1095. |
| 2009.00.00 | Zhou, Ji | -- | -- | -- |
| 2010 Spring | Participant | Rotations or Research Group | Topic | References
NEED TO UPDATE ALL REFERENCES WITH CORRECT CITATIONS USING JACS FORMAT |
| 2010.01.27 | -- | GRD 500 | Introduction | No discussion. |
| 2010.02.03 | -- | GRD 500 | Scientific Misconduct | Discussion. |
| 2010.02.10 | -- | GRD 500 | Mentorship | Discussion. |
| 2010.02.17 | -- | GRD 500 | Authorship | Discussion. |
| 2010.02.24 | -- | GRD 500 | Plagiarism | Discussion. |
| 2010.03.03 | -- | GRD 500 | Managing Data | Discussion. |
| 2010.03.10 | -- | GRD 500 | Journalism | Discussion. |
| 2010.03.17 | -- | -- | -- | Research Rotation Presentations. |
| 2010.03.24 | Adler, Jeremy | Group | Topic | Citation. |
| 2010.03.31 | -- | -- | -- | Spring Break. |
| 2010.04.07 | Au, Loretta | Green | Neutral Networks | Bastolla, et al.; Connectivity of neutral networks, overdispersion and structural conservation in protein evolution. J Mol Evol 2003, 56, 243-254. |
| 2010.04.14 | Falk, Adam | Rizzo | Thermodynamic Integration | Steinbrecher, T., Mobley, D.L., Case, D.A.; Nonlinear scaling schemes for Lennard-Jones interactions in free energy calculations. J Chem Phys 2007, 127, 214108. |
| 2010.04.21 | Jiang, Lingling | Group | Topic | Citation. |
| 2010.04.28 | Vo, Emily | Rest | Binding Site Evolution | Lusk, R. W., Eisen, M. B.; Evolutionary Mirages: Selection on binding site composition creates the illusion of conserved grammars in drosophila enhancers. PLoS Genetics 2010, 6, (1), 1-8. |
| 2010.05.05 | Last, First | Group | Topic | Citation. |
