File list
This special page shows all uploaded files.
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| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 16:15, 3 March 2014 | 1HVR flexible dock worst.png (file) |  |
470 KB | 1 | |
| 16:14, 3 March 2014 | 1HVR flexible dock best.png (file) |  |
470 KB | 1 | |
| 17:02, 1 April 2013 | AMBER RMSD plot.jpg (file) |  |
179 KB | 1 | |
| 15:52, 27 March 2013 | Example.png (file) |  |
9 KB | 2 | |
| 23:37, 5 March 2013 | Boxexample.png (file) |  |
298 KB | Reverted to version as of 03:04, 6 March 2013 | 3 |
| 23:05, 5 March 2013 | Gridexample.png (file) |  |
364 KB | 1 | |
| 22:47, 5 March 2013 | Dock worstligand and original.png (file) |  |
298 KB | 1 | |
| 22:46, 5 March 2013 | Dock bestligand and original.png (file) |  |
306 KB | 1 | |
| 22:19, 5 March 2013 | Dock original ligand.png (file) |  |
205 KB | 1 | |
| 21:42, 5 March 2013 | Receptor surface.png (file) |  |
214 KB | 1 | |
| 16:40, 4 March 2013 | 1LOQ.PNG (file) |  |
44 KB | 1 | |
| 16:37, 4 March 2013 | Image.png (file) |  |
310 KB | 1 | |
| 14:37, 9 July 2012 | Yuchen.email.png (file) |  |
3 KB | 8 | |
| 01:17, 11 May 2012 | 2012 Dock Tutorial Footprints 2.png (file) |  |
43 KB | 1 | |
| 01:11, 11 May 2012 | 2012 Dock Tutorial Footprints 1.png (file) |  |
44 KB | 1 | |
| 13:03, 19 March 2012 | 2012 AMBER RMSD plot.jpg (file) |  |
799 KB | Example RMSD plot for AMBER 2012 Tutorial | 1 |
| 12:44, 19 March 2012 | 2012 AMBER hbond plot.jpg (file) |  |
579 KB | Example hydrogen bond distance plot for 2012 AMBER tutorial | 1 |
| 08:17, 19 March 2012 | 2012 AMBER MMGBSA plot.jpg (file) |  |
639 KB | Adjusted Y-axis | 2 |
| 10:25, 14 March 2012 | Protein wat.png (file) |  |
253 KB | 1 | |
| 10:13, 14 March 2012 | Protein gas.png (file) |  |
202 KB | 1 | |
| 08:02, 13 March 2012 | 2012 AMBER Tutorial 1DF8 ligand water noH.jpg (file) |  |
24 KB | 1 | |
| 07:59, 13 March 2012 | 2012 AMBER Tutorial 1DF8 ligand water.jpg (file) |  |
66 KB | 1 | |
| 07:36, 13 March 2012 | 2012 AMBER Tutorial 1DF8 ligand gas.jpg (file) |  |
13 KB | 2012_AMBER_Tutorial_1DF8_ligand_gas | 1 |
| 07:08, 13 March 2012 | Dock Scoring research image1.png (file) |  |
51 KB | 1 | |
| 14:19, 28 February 2012 | DOCK tutorial 2012 VirtualScreeningSample.png (file) |  |
212 KB | 1 | |
| 11:37, 27 February 2012 | 2012 DOCK Tutorial 1DF8 spheres.png (file) |  |
221 KB | 2012_DOCK_Tutorial_1DF8_spheres | 1 |
| 11:34, 27 February 2012 | 1DF8.dockprep.barbarav.png (file) |  |
472 KB | 1 | |
| 11:29, 27 February 2012 | 2012 DOCK Tutorial 1DF8 surface spheres 6 angstroms.png (file) |  |
154 KB | 2012_DOCK_Tutorial_1DF8_surface_spheres_6 angstroms | 1 |
| 11:25, 27 February 2012 | 2012 DOCK Tutorial 1DF8 surface spheres 10 angstroms.png (file) |  |
165 KB | 2012_DOCK_Tutorial_1DF8_surface_spheres_10 angstroms | 1 |
| 11:14, 27 February 2012 | DOCK 5th run result.png (file) |  |
305 KB | 1 | |
| 11:14, 27 February 2012 | DOCK 4th run result.png (file) |  |
299 KB | 1 | |
| 11:07, 27 February 2012 | DOCK 3rd run result.png (file) |  |
301 KB | 1 | |
| 11:04, 27 February 2012 | 2012 DOCK Tutorial 1DF8 dms.png (file) |  |
50 KB | Reverted to version as of 15:01, 27 February 2012 | 4 |
| 10:55, 27 February 2012 | VirtualScreeningTest.png (file) |  |
50 KB | 1 | |
| 10:50, 27 February 2012 | DOCK 2nd run result.png (file) |  |
301 KB | By only setting orient_ligand option to "yes", the docking result looks pretty bad. | 1 |
| 10:48, 27 February 2012 | 2012 DOCK Tutorial 1DF8 surface.png (file) |  |
172 KB | 1 | |
| 18:02, 26 February 2012 | 1DF8 box.png (file) |  |
141 KB | Chimera rendering of 1DF8 receptor with a ligand and the box generated around the ligand using showbox program. | 1 |
| 15:20, 26 February 2012 | Flow chart.JPG (file) |  |
63 KB | Flow Chart of Questions for Showbox (Red path is followed in this tutorial) source:http://dock.compbio.ucsf.edu/DOCK_6/tutorials/grid_generation/generating_grid.html | 1 |
| 16:57, 6 December 2011 | Ubq ss.jpg (file) |  |
70 KB | 3 | |
| 16:56, 6 December 2011 | Ubq scount.jpg (file) |  |
57 KB | 4 | |
| 16:56, 6 December 2011 | Ubq rmsf plot.jpg (file) |  |
27 KB | 2 | |
| 16:56, 6 December 2011 | Ubq nvt energy.jpg (file) |  |
20 KB | 2 | |
| 16:56, 6 December 2011 | Ubq npt energy.jpg (file) |  |
38 KB | 2 | |
| 16:52, 6 December 2011 | Ubq energy.jpg (file) |  |
20 KB | 2 | |
| 16:49, 6 December 2011 | Ubq rmsd.jpg (file) |  |
36 KB | 3 | |
| 11:05, 27 July 2011 | Ubq rmsf structure.jpg (file) |  |
24 KB | 2 | |
| 15:13, 21 July 2011 | Ubq ions.jpg (file) |  |
65 KB | 1 | |
| 13:22, 21 July 2011 | Ubq sol.jpg (file) |  |
79 KB | 2 | |
| 12:54, 21 July 2011 | Pbc overlap.jpg (file) |  |
55 KB | 2 | |
| 11:50, 15 June 2011 | Brian email.png (file) |  |
7 KB | 1 |
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