2023 AMBER tutorial 2 with PDBID 3WZE
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Revision as of 12:37, 26 March 2023 by
Stonybrook
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Contents
1
Introduction
2
Directory Setup
3
3WZE Structures
3.1
Receptor
3.2
Ligand
4
Amber Simulation Parameters
5
Tleap
6
Equilibration
7
Production
8
MD Analysis
8.1
RMSD
8.2
Hydrogen Bonding
8.3
MM-GBSA
Introduction
Directory Setup
3WZE Structures
Receptor
Ligand
Amber Simulation Parameters
Tleap
Equilibration
Production
MD Analysis
RMSD
Hydrogen Bonding
MM-GBSA
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