2024 AMBER tutorial 2 with PDBID 1NDV

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Contents

1 Introduction
- 1.1 Getting Started
2 Structure
3 Force Field Parameters
4 TLEap
5 Equilibration
6 Production
7 Analysis
- 7.1 RMSD
- 7.2 MM-GBSA

Introduction

Getting Started

Structure

Force Field Parameters

TLEap

Equilibration

Production

Analysis

RMSD

MM-GBSA

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