Untar the DOCK distribution.
Select the correct Makefile for your platform, and run the configure script.
./configure gnu make install
Compilation Blue Gene
For the front end node, gnu compilers work well. For the compute nodes, use the provided bluegenel and bluegenep files respectively. Note that energy grids have to be generated on the front end node in order to work on the compute nodes. Copying grids generated on a regular unix machine will not work due to different endian conventions.