Difference between revisions of "Rizzo Lab Members and Contact Information"

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(CURRENT MEMBERS)
(CURRENT MEMBERS)
 
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{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
|- style="background:white"
 
|- style="background:white"
! style="width:30%" |Robert C. Rizzo
+
! style="width:45%" |Robert C. Rizzo
  
 
Stony Brook University  
 
Stony Brook University  
Line 14: Line 14:
 
Stony Brook, NY 11794-3600
 
Stony Brook, NY 11794-3600
  
! style="width:30%" |Email:  [[Image:Rob.email.jpg]]
+
! style="width:45%" |Email:  rizzorc [at] gmail [dot] com
  
 
Office: (631) 632-9340
 
Office: (631) 632-9340
Line 22: Line 22:
 
Fax:    (631) 632-8490
 
Fax:    (631) 632-8490
  
Website: rizzo.ams.sunysb.edu
+
Website: rizzolab.org
  
 
Wiki: ringo.ams.sunysb.edu
 
Wiki: ringo.ams.sunysb.edu
  
! style="width:30%" |Rob cell: 631 944 2891
+
|}
 
 
Yulin cell: 574 339 8805
 
 
 
Lingling cell: 371 1707
 
 
 
Fochtman cell: 631 790 7738
 
 
 
Patrick home: 631 828 1637
 
 
 
Patrick cell: 203 273 6149
 
 
 
Joe cell: 612 581 8355
 
 
 
Yuchen cell: 631 559 2040
 
 
 
Trent cell: 516 381 0926
 
  
Sudipto cell: 631 220 5744
+
[[Image: Rizzo_lab_2019.png|thumb|center|4000px|'''Current 2019 Rizzo Lab Members:''' ''from left to right'' Stephen, Guilherme, Rodger, Rob, Chris, Hyper Master of DOCK John, Scott, and Lauren]]
|-
 
|}
 
  
 
== CURRENT MEMBERS ==
 
== CURRENT MEMBERS ==
Line 58: Line 40:
 
|-
 
|-
 
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo]
 
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo]
||[[Image:Rob.email.png]]
+
||rizzorc [at] gmail [dot] com
||PI
+
||Principal investigator
||group leader
+
||Group leader
 
||2004 - present
 
||2004 - present
 
|-
 
|-
|Yulin Huang
+
|[https://www.gduarter.com Guilherme Duarte Ramos Matos]
||[[Image:Yulin.email.png]]
+
||Guilherme.duarteramosmatos [at] stonybrook [dot] edu
||Graduate Student
+
||Postdoctoral Researcher
||EGFR
+
||Cheminformatics integration, COVID-19
||2007 - present
+
||2019 - present
 +
|-
 +
|[http://ringo.ams.sunysb.edu/~lprentis/ Lauren Prentis]
 +
||lauren.prentis [at] stonybrook [dot] edu
 +
||Doctoral Student
 +
||Tsg101, de novo design, covalent docking, genetic algorithm
 +
||2016 - present
 +
|-
 +
|Stephen Telehany
 +
||stephen.telehany [at] stonybrook [dot] edu
 +
||Doctoral Student
 +
||Zika Virus, de novo design
 +
||2017 - present
 
|-
 
|-
|[http://ringo.ams.sunysb.edu/~lingling/ Lingling Jiang]
+
|John Bickel
||[[Image:Lingling.email.png]]
+
||john.bickel [at] stonybrook [dot] edu
||Graduate Student
+
||Doctoral Student
||HIVgp41, pharmacophore modeling
+
||de novo design
||2010 - present
+
||2019 - present
 
|-
 
|-
|Brian Fochtman
+
||Christopher Corbo
||[[Image:brian_email.png]]
+
||christopher.corbo [at] stonybrook [dot] edu
||Graduate Student
+
||Doctoral Student
||Dock Development
+
||Test Set benchmarking, COVID-19
||February 2011 - present
+
||2019 - present
 
|-
 
|-
|Patrick Holden
+
||Steven Pak
||patrick.m.holden@gmail.com
+
||steven.pak [at] stonybrook [dot] edu
||Research Aide
+
||Doctoral Student
||HIVgp41
+
||de novo design, FGFR2,
||Summer 2009 - present
+
||2020 - present
 
|-
 
|-
|[http://ringo.ams.sunysb.edu/~wjallen/ William Joseph Allen]
+
||Rodger Tan
||[[Image:Joe allen email.png]]
+
||rodger.tan [at] stonybrook [dot] edu
||Postdoc
+
||Undergraduate Student
||DOCK development, HIVgp41
+
||Test Set, benchmarking, de novo design
||2011 - present
+
||2019 - present
 
|-
 
|-
|Yuchen Zhou
+
|Scott Laverty
||[[Image:yuchen.email.png]]
+
|scott.laverty [at] stonybrook [dot] edu
||Graduate Student
+
|Undergraduate Student
||DOCK Development, Volume Matching
+
|DOCK6 benchmarking with Autodock4
||2012 - present
+
|2019 - present
 
|}
 
|}
  
Line 104: Line 98:
 
|- style="background:lightgreen"
 
|- style="background:lightgreen"
 
! style="width 20%" !|Name
 
! style="width 20%" !|Name
! style="width:10%" !|E-mail
 
 
! style="width:20%" !|Status
 
! style="width:20%" !|Status
 
! style="width:20%" !|Project
 
! style="width:20%" !|Project
 
! style="width:10%" !|Year
 
! style="width:10%" !|Year
! style="width:20%" !|Position
+
! style="width:20%" !|New Position
 +
|-
 +
|Yuchen Zhou
 +
||Doctoral / Masters student
 +
||BoNT/E, DOCK scoring functions, FABP5
 +
||2012 - 2018
 +
|| Postdoc, [http://filizolalab.org/ Filizola Lab] at [https://icahn.mssm.edu/ ISMMS]
 +
|-
 +
|Jiaye Guo
 +
||Doctoral student
 +
||Solvated footprints, Small-molecule inhibitor for HER2
 +
||2013 - 2018
 +
|| Postdoc, [http://www.choderalab.org/ Chodera Lab] at [https://www.mskcc.org/ MSKCC]
 +
|-
 +
|Courtney Singleton
 +
||MD / PhD Student
 +
||HIVgp41, De novo design, genetic algorithm
 +
||2014 - 2018
 +
||Stony Brook Medical School
 +
|-
 +
|Dwight McGee
 +
||Postdoctoral Researcher
 +
||HIVgp41, Free energy calculations, de novo design
 +
||2015 - 2018
 +
|| [http://www.silicontx.com/ Silicon Therapeutics]
 +
|-
 +
|Brian Fochtman
 +
||Doctoral student
 +
||HIVgp41, DOCK development
 +
||2011 - 2017
 +
||The FDA
 +
|-
 +
|Lingling Jiang
 +
||jianglilian68 [at] gmail [dot] com
 +
||HIVgp41, Pharmacophore modeling
 +
||2010 - 2015
 +
||Novo Nordisk
 
|-
 
|-
|[http://rizzo.ams.sunysb.edu/~sudipto/ Sudipto Mukherjee]
+
|Brian Ralph
||[[Image:Sudipto.email.png]]
+
||Undergraduate student
||Graduate student
+
||Fatty acid binding protein, De novo design
 +
||2013 - 2015
 +
||Dental school
 +
|-
 +
|William J. Allen
 +
||Postdoctoral fellow
 +
||HIVgp41, DOCK development
 +
||2011 - 2015
 +
||[http://www.tacc.utexas.edu/ TACC]
 +
|-
 +
|Yulin Huang
 +
||Doctoral student
 +
||EGFR, IGF-IR
 +
||2008 - 2013
 +
||Wall Street
 +
|-
 +
|Sudipto Mukherjee
 +
||Doctoral / Masters student
 
||DOCK development, HIVgp41
 
||DOCK development, HIVgp41
 
||2005 - 2012
 
||2005 - 2012
|| [http://www.voelzlab.org/ Voelz Lab]
+
||Postdoc, [http://www.voelzlab.org/ Voelz Lab]
 
|-
 
|-
 
|[http://docking.org/~tbalius/ Trent E. Balius]
 
|[http://docking.org/~tbalius/ Trent E. Balius]
||[[Image:Trent.email.png]]
+
||Doctoral student
||Graduate student
 
 
||EGFR, HIVgp41, DOCK development
 
||EGFR, HIVgp41, DOCK development
 
||2007 - 2012
 
||2007 - 2012
|| [http://shoichetlab.compbio.ucsf.edu/ Shoichet Lab]
+
||Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the [https://frederick.cancer.gov/ Frederick National Lab for Cancer Research]
 +
|-
 +
|Patrick Holden
 +
||patrick.m.holden [at] gmail [dot] com
 +
||HIVgp41
 +
||2009 - 2011
 +
|| --
 
|-
 
|-
|Jibril Ashiru-Balogun
+
| Jibril Ashiru-Balogun
||[[Image:Jibril.email.png]]
+
||Undergraduate student
||Undergraduate Student
 
 
||HIVgp41
 
||HIVgp41
||Summer 2010 - 2011
+
||2010 - 2011
 +
|| --
 +
|-
 +
| Brian Shea
 +
||Undergraduate student
 +
||Kinases
 +
||2010
 +
|| --
 +
|-
 +
| Patrick Murphy
 +
||Undergraduate student
 +
||Influenza
 +
||2009 - 2010
 
|| --
 
|| --
 
|-
 
|-
 
| Rashi Goyal
 
| Rashi Goyal
||[[Image:Rashi.email.png]]
+
||Masters student
||graduate student
+
||Influenza, HIV  
||Influenza/ HIV  
 
 
||2007 - 2010
 
||2007 - 2010
 
|| --
 
|| --
 
|-
 
|-
|Brian McGillick
+
| Brian McGillick
||[[Image:Brian.email.png]]
+
||Masters student
||graduate student
 
 
||HIVgp41
 
||HIVgp41
 
||2007 - 2010
 
||2007 - 2010
 
|| --
 
|| --
 
|-
 
|-
||Kenneth Ascher
+
| Kenneth Ascher
|| NA
+
||Undergraduate student
||undergraduate student
+
||DOCK method development
|| NA
 
 
||2009 - 2010
 
||2009 - 2010
 
|| --
 
|| --
 
|-
 
|-
|Dimir Abrar
+
| Dimir Abrar
| NA
+
||Undergraduate student
|undergraduate student
+
||HIVRT crossdocking
| NA
+
||2008 - 2009
|2008-2009
+
|| --
| --
 
 
|-
 
|-
|Chetan Raj Rupakheti
+
| Chetan Raj Rupakheti
| NA
+
||Summer student
|summer student
+
||HIVgp41
| NA
+
||2008
|2008
+
|| --
| --
 
 
|-
 
|-
|Bentley Strockbine
+
| Bentley Strockbine
| NA
+
||Postdoc  
|postdoctoral  
+
||HIVgp41  
| HIVgp41  
+
||2005 - 2007
|2005 - 2007
+
|| --
| --
 
 
|-
 
|-
|Noel Carrascal
+
| Noel Carrascal
| NA
+
||Doctoral student
|graduate student
+
||DOCK method development
| NA
+
||2005 - 2007
|2005 - 2007
+
|| --
| --
 
 
|-
 
|-
|Ricky Chachra
+
| Ricky Chachra
| NA
+
||Undergraduate student
|undergraduate student
+
||Influenza drug resistance
| NA
+
||2005 - 2007
|2005 - 2007
+
|| --  
| --  
 
 
|-
 
|-
|Amee Patel
+
| Amee Patel
| NA
+
||Undergraduate student
|undergraduate student
+
||Testset development
| NA
+
||2005 - 2007
|2005 - 2007
+
|| --
| --
 
|-
 
|-
 
|}
 
 
 
== ROTATION STUDENTS ==
 
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
|- style="background:orange"
 
! style="width:40%" !|Name
 
! style="width:50%" !|Program
 
|-
 
||Alvin Acerbo||Biochemistry and Struct. Biology
 
 
|-
 
|-
||Jeremy Adler||Medical Scientist MD/PhD
 
 
|-  
 
|-  
||Ronald Chiu||Biology
 
|-
 
||Roberto Colson||Applied Math & Stat
 
|-
 
||Ji Han||Applied Math & Stat
 
|-
 
||Zhuying Huang||Applied Math & Stat
 
|-
 
||Dongyung Kim||Applied Math & Stat
 
|-
 
||Nikolay Krantsevich||Applied Math & Stat
 
|-
 
||Xindi Li||Applied Math & Stat
 
|-
 
||Noha Lim||Applied Math & Stat
 
|-
 
||Christopher N. J. Marai||Biochem. and Struct. Bio.
 
|-
 
||Vadim Patsalo||Applied Math & Stat
 
|-
 
||Shou-Chiang Peng||Applied Math & Stat
 
|-
 
||Navamita Ray||Applied Math & Stat
 
|-
 
||Jerry Shipman||Biomedical Engineering
 
|-
 
||Jeewoen Sin||Applied Math & Stat
 
|-
 
||Roman Sinayev||Applied Math & Stat
 
|-
 
||Jie Wu||Applied Math & Stat
 
|-
 
||Yunting Xia||Applied Math & Stat
 
|-
 
||Eric||Applied Math & Stat
 
|-
 
 
|}
 
|}

Latest revision as of 12:04, 17 June 2020

CONTACT

Robert C. Rizzo

Stony Brook University

Department of Applied Mathematics and Statistics

Office: Math Tower 1-111

Lab: Math Tower 3-129

Stony Brook, NY 11794-3600

Email: rizzorc [at] gmail [dot] com

Office: (631) 632-9340

Lab: (631) 632-8519

Fax: (631) 632-8490

Website: rizzolab.org

Wiki: ringo.ams.sunysb.edu

Current 2019 Rizzo Lab Members: from left to right Stephen, Guilherme, Rodger, Rob, Chris, Hyper Master of DOCK John, Scott, and Lauren

CURRENT MEMBERS

Name E-mail Status Project Year
Dr. Robert C. Rizzo rizzorc [at] gmail [dot] com Principal investigator Group leader 2004 - present
Guilherme Duarte Ramos Matos Guilherme.duarteramosmatos [at] stonybrook [dot] edu Postdoctoral Researcher Cheminformatics integration, COVID-19 2019 - present
Lauren Prentis lauren.prentis [at] stonybrook [dot] edu Doctoral Student Tsg101, de novo design, covalent docking, genetic algorithm 2016 - present
Stephen Telehany stephen.telehany [at] stonybrook [dot] edu Doctoral Student Zika Virus, de novo design 2017 - present
John Bickel john.bickel [at] stonybrook [dot] edu Doctoral Student de novo design 2019 - present
Christopher Corbo christopher.corbo [at] stonybrook [dot] edu Doctoral Student Test Set benchmarking, COVID-19 2019 - present
Steven Pak steven.pak [at] stonybrook [dot] edu Doctoral Student de novo design, FGFR2, 2020 - present
Rodger Tan rodger.tan [at] stonybrook [dot] edu Undergraduate Student Test Set, benchmarking, de novo design 2019 - present
Scott Laverty scott.laverty [at] stonybrook [dot] edu Undergraduate Student DOCK6 benchmarking with Autodock4 2019 - present

FORMER MEMBERS

Name Status Project Year New Position
Yuchen Zhou Doctoral / Masters student BoNT/E, DOCK scoring functions, FABP5 2012 - 2018 Postdoc, Filizola Lab at ISMMS
Jiaye Guo Doctoral student Solvated footprints, Small-molecule inhibitor for HER2 2013 - 2018 Postdoc, Chodera Lab at MSKCC
Courtney Singleton MD / PhD Student HIVgp41, De novo design, genetic algorithm 2014 - 2018 Stony Brook Medical School
Dwight McGee Postdoctoral Researcher HIVgp41, Free energy calculations, de novo design 2015 - 2018 Silicon Therapeutics
Brian Fochtman Doctoral student HIVgp41, DOCK development 2011 - 2017 The FDA
Lingling Jiang jianglilian68 [at] gmail [dot] com HIVgp41, Pharmacophore modeling 2010 - 2015 Novo Nordisk
Brian Ralph Undergraduate student Fatty acid binding protein, De novo design 2013 - 2015 Dental school
William J. Allen Postdoctoral fellow HIVgp41, DOCK development 2011 - 2015 TACC
Yulin Huang Doctoral student EGFR, IGF-IR 2008 - 2013 Wall Street
Sudipto Mukherjee Doctoral / Masters student DOCK development, HIVgp41 2005 - 2012 Postdoc, Voelz Lab
Trent E. Balius Doctoral student EGFR, HIVgp41, DOCK development 2007 - 2012 Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the Frederick National Lab for Cancer Research
Patrick Holden patrick.m.holden [at] gmail [dot] com HIVgp41 2009 - 2011 --
Jibril Ashiru-Balogun Undergraduate student HIVgp41 2010 - 2011 --
Brian Shea Undergraduate student Kinases 2010 --
Patrick Murphy Undergraduate student Influenza 2009 - 2010 --
Rashi Goyal Masters student Influenza, HIV 2007 - 2010 --
Brian McGillick Masters student HIVgp41 2007 - 2010 --
Kenneth Ascher Undergraduate student DOCK method development 2009 - 2010 --
Dimir Abrar Undergraduate student HIVRT crossdocking 2008 - 2009 --
Chetan Raj Rupakheti Summer student HIVgp41 2008 --
Bentley Strockbine Postdoc HIVgp41 2005 - 2007 --
Noel Carrascal Doctoral student DOCK method development 2005 - 2007 --
Ricky Chachra Undergraduate student Influenza drug resistance 2005 - 2007 --
Amee Patel Undergraduate student Testset development 2005 - 2007 --