User contributions
- 21:15, 18 November 2022 (diff | hist) . . (-3) . . 2022 AMS-535 Fall (top)
- 02:46, 18 November 2022 (diff | hist) . . (+6) . . Developer's Info Goals (→Mutations) (top)
- 02:45, 18 November 2022 (diff | hist) . . (+18) . . Developer's Info Goals (→Fitness/Pruning/Diversity/Other)
- 19:04, 16 November 2022 (diff | hist) . . (+3) . . 2022 AMS-535 Fall
- 19:00, 16 November 2022 (diff | hist) . . (+280) . . 2022 AMS-535 Fall
- 10:13, 31 October 2022 (diff | hist) . . (+70) . . Developer's Info Goals
- 10:12, 31 October 2022 (diff | hist) . . (+2) . . Developer's Info Goals
- 10:11, 31 October 2022 (diff | hist) . . (+160) . . Developer's Info Goals
- 12:20, 26 October 2022 (diff | hist) . . (+40) . . Developer's Info Goals (→General To-Do)
- 10:53, 17 October 2022 (diff | hist) . . (-73) . . DOCK GA Development Goals (→To Do List)
- 10:52, 17 October 2022 (diff | hist) . . (+55) . . DOCK GA Development Goals
- 10:12, 17 October 2022 (diff | hist) . . (-1) . . DOCK GA Development Goals
- 10:10, 17 October 2022 (diff | hist) . . (+85) . . DOCK GA Development Goals
- 09:52, 17 October 2022 (diff | hist) . . (-75) . . DOCK GA Development Goals
- 09:44, 17 October 2022 (diff | hist) . . (+138) . . DOCK GA Development Goals
- 09:38, 17 October 2022 (diff | hist) . . (+6) . . DOCK GA Development Goals (→To Do List)
- 09:36, 17 October 2022 (diff | hist) . . (+32) . . DOCK GA Development Goals (→To Do List)
- 17:48, 31 August 2022 (diff | hist) . . (0) . . 2022 AMS-535 Fall (Swapped two students presentation dates.)
- 14:56, 31 August 2022 (diff | hist) . . (+104) . . 2022 AMS-535 Fall (Undo revision 15091 by BrockBoysan (talk))
- 10:55, 31 August 2022 (diff | hist) . . (-104) . . 2022 AMS-535 Fall (Undo revision 15090 by BrockBoysan (talk))
- 10:48, 31 August 2022 (diff | hist) . . (+104) . . 2022 AMS-535 Fall (Revised Schedule)
- 09:46, 31 August 2022 (diff | hist) . . (0) . . 2022 AMS-535 Fall
- 11:32, 30 August 2022 (diff | hist) . . (-104) . . 2022 AMS-535 Fall (Undo revision 15085 by BrockBoysan (talk))
- 11:26, 30 August 2022 (diff | hist) . . (+104) . . 2022 AMS-535 Fall (Schedule set up for Fall 2022)
- 14:57, 22 August 2022 (diff | hist) . . (+16) . . 2022 AMS-535 Fall
- 11:47, 18 August 2022 (diff | hist) . . (+28) . . 2022 AMS-535 Fall (→Syllabus Notes)
- 11:14, 18 August 2022 (diff | hist) . . (-1) . . m 2022 AMS-535 Fall (→Syllabus Notes)
- 11:11, 18 August 2022 (diff | hist) . . (+15) . . m 2022 AMS-535 Fall (→Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage)
- 10:39, 21 March 2022 (diff | hist) . . (-12) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→Focused Growth) (top)
- 20:43, 20 March 2022 (diff | hist) . . (-6) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→Focused Denovo Design)
- 20:42, 20 March 2022 (diff | hist) . . (-2) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→Focused Denovo Design)
- 20:42, 20 March 2022 (diff | hist) . . (+424) . . 2022 Denovo tutorial 3 with PDBID 1X70
- 20:41, 20 March 2022 (diff | hist) . . (+34) . . N File:1X70 focus dn.png (The results for 1X70 2022 focus dn) (top)
- 20:33, 20 March 2022 (diff | hist) . . (+4) . . 2022 Denovo tutorial 3 with PDBID 1X70
- 20:33, 20 March 2022 (diff | hist) . . (+1) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→Focused Denovo Design)
- 20:33, 20 March 2022 (diff | hist) . . (+34) . . 2022 Denovo tutorial 3 with PDBID 1X70
- 20:32, 20 March 2022 (diff | hist) . . (-15) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 20:31, 20 March 2022 (diff | hist) . . (+326) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→Focused Growth)
- 20:27, 20 March 2022 (diff | hist) . . (+43) . . N File:1X70 focus dn pose.png (The top scoring focus denovo pose from 1X70) (top)
- 13:42, 20 March 2022 (diff | hist) . . (+105) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→Focused Growth)
- 13:04, 20 March 2022 (diff | hist) . . (-5,836) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 13:03, 20 March 2022 (diff | hist) . . (+5,836) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:46, 20 March 2022 (diff | hist) . . (+8,573) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:19, 20 March 2022 (diff | hist) . . (+36) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:18, 20 March 2022 (diff | hist) . . (0) . . File:715 frags.png (BrockBoysan uploaded a new version of File:715 frags.png) (top)
- 12:16, 20 March 2022 (diff | hist) . . (-1) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:16, 20 March 2022 (diff | hist) . . (+123) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:15, 20 March 2022 (diff | hist) . . (+19) . . N File:715 frags.png (2022 1X70 all frags)
- 12:07, 20 March 2022 (diff | hist) . . (0) . . 2022 Denovo tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:06, 20 March 2022 (diff | hist) . . (+28) . . N File:1X70 sidechains.png (Sidechains for 2022 1X70 715) (top)
- 11:46, 20 March 2022 (diff | hist) . . (+728) . . N 2022 Denovo tutorial 3 with PDBID 1X70 (Created page with "==System Preparation== '''Directory Setup''' ATTENTION: This tutorial requires you to have first completed the 2022 1X70 VS tutorial: https://ringo.ams.stonybrook.edu/index.p...")
- 11:38, 20 March 2022 (diff | hist) . . (+33) . . N File:1X70 linkers.png (Linkers for 2022 DN 1X70 tutorial) (top)
- 10:53, 9 March 2022 (diff | hist) . . (+132) . . 2022 DOCK tutorial 3 with PDBID 1X70
- 01:41, 9 March 2022 (diff | hist) . . (-184) . . 2022 DOCK tutorial 3 with PDBID 1X70
- 01:40, 9 March 2022 (diff | hist) . . (+383) . . 2022 DOCK tutorial 3 with PDBID 1X70
- 01:37, 9 March 2022 (diff | hist) . . (+5,562) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Virtual Screen)
- 00:53, 9 March 2022 (diff | hist) . . (+48) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Energy Minimization for the ligand)
- 15:00, 8 March 2022 (diff | hist) . . (-7) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Introduction)
- 13:25, 8 March 2022 (diff | hist) . . (+21) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making The Infamous Grid)
- 13:24, 8 March 2022 (diff | hist) . . (+48) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 13:24, 8 March 2022 (diff | hist) . . (+50) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 11:58, 8 March 2022 (diff | hist) . . (+12) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 11:57, 8 March 2022 (diff | hist) . . (+109) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 11:56, 8 March 2022 (diff | hist) . . (+8) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 11:55, 8 March 2022 (diff | hist) . . (+516) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 11:51, 8 March 2022 (diff | hist) . . (+138) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→1X70)
- 11:44, 8 March 2022 (diff | hist) . . (+19) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Introduction)
- 11:43, 8 March 2022 (diff | hist) . . (+310) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Introduction)
- 11:33, 8 March 2022 (diff | hist) . . (+425) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→DOCK)
- 11:27, 8 March 2022 (diff | hist) . . (+128) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 11:25, 8 March 2022 (diff | hist) . . (+44) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 11:25, 8 March 2022 (diff | hist) . . (+276) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 11:22, 8 March 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Placeholder)
- 11:22, 8 March 2022 (diff | hist) . . (+4,431) . . 2022 DOCK tutorial 3 with PDBID 1X70
- 11:21, 8 March 2022 (diff | hist) . . (0) . . File:1X70 min fp.png (BrockBoysan uploaded a new version of File:1X70 min fp.png) (top)
- 11:09, 8 March 2022 (diff | hist) . . (0) . . File:1X70 min fp.png (BrockBoysan uploaded a new version of File:1X70 min fp.png)
- 11:01, 8 March 2022 (diff | hist) . . (0) . . File:1X70 min fp.png (BrockBoysan uploaded a new version of File:1X70 min fp.png)
- 10:59, 8 March 2022 (diff | hist) . . (+47) . . N File:1X70 min fp.png (1X70 footprint for minimized vs original ligand)
- 19:56, 7 March 2022 (diff | hist) . . (+1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 19:55, 7 March 2022 (diff | hist) . . (+1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 19:55, 7 March 2022 (diff | hist) . . (+306) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 19:50, 7 March 2022 (diff | hist) . . (+114) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 19:49, 7 March 2022 (diff | hist) . . (+25) . . N File:1X70 sel spheres.png (Selected spheres for 1X70) (top)
- 19:46, 7 March 2022 (diff | hist) . . (+244) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Energy Minimization for the ligand)
- 19:45, 7 March 2022 (diff | hist) . . (+95) . . N File:1X70 lig minimized.png (The overlay of the original unminimized (blue) ligand with the minimized (tan) ligand for 1X70.) (top)
- 19:40, 7 March 2022 (diff | hist) . . (+3,889) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Energy Minimization for the ligand)
- 21:27, 1 March 2022 (diff | hist) . . (-5) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 21:27, 1 March 2022 (diff | hist) . . (+18) . . N File:1X70 bmp.png (Bump grid for 1X70) (top)
- 21:26, 1 March 2022 (diff | hist) . . (+71) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 21:25, 1 March 2022 (diff | hist) . . (+26) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 21:25, 1 March 2022 (diff | hist) . . (+5) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 21:25, 1 March 2022 (diff | hist) . . (+25) . . N File:1X70 grid nrg.png (The energy grid for 1X70.) (top)
- 21:24, 1 March 2022 (diff | hist) . . (+167) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 21:21, 1 March 2022 (diff | hist) . . (+1,264) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the grid)
- 21:15, 1 March 2022 (diff | hist) . . (0) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the box)
- 21:14, 1 March 2022 (diff | hist) . . (+551) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making The Infamous Grid)
- 21:03, 1 March 2022 (diff | hist) . . (+227) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 20:59, 1 March 2022 (diff | hist) . . (+301) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 20:55, 1 March 2022 (diff | hist) . . (+32) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 20:54, 1 March 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 20:53, 1 March 2022 (diff | hist) . . (0) . . File:1X70 surface.png (BrockBoysan uploaded a new version of File:1X70 surface.png) (top)
- 18:45, 1 March 2022 (diff | hist) . . (+79) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 14:53, 1 March 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 14:53, 1 March 2022 (diff | hist) . . (+53) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 14:52, 1 March 2022 (diff | hist) . . (+65) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 14:50, 1 March 2022 (diff | hist) . . (+109) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 13:43, 1 March 2022 (diff | hist) . . (+532) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 13:31, 1 March 2022 (diff | hist) . . (+16) . . N File:1X70 multiple occupancy.png (some grep output) (top)
- 13:03, 1 March 2022 (diff | hist) . . (+167) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 13:00, 1 March 2022 (diff | hist) . . (+10) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 12:59, 1 March 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 12:59, 1 March 2022 (diff | hist) . . (+136) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 12:59, 1 March 2022 (diff | hist) . . (-137) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 12:57, 1 March 2022 (diff | hist) . . (+37) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 12:57, 1 March 2022 (diff | hist) . . (+30) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 12:56, 1 March 2022 (diff | hist) . . (0) . . N File:1X70 dock prep.png (top)
- 10:58, 1 March 2022 (diff | hist) . . (+74) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 18:42, 28 February 2022 (diff | hist) . . (-1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 18:42, 28 February 2022 (diff | hist) . . (+76) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Receptor Prep)
- 18:41, 28 February 2022 (diff | hist) . . (+33) . . N File:1X70 noH.png (1X70 with no Hydrogens or Ligand.) (top)
- 18:26, 28 February 2022 (diff | hist) . . (+21) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 18:25, 28 February 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Introduction)
- 18:24, 28 February 2022 (diff | hist) . . (+189) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 18:24, 28 February 2022 (diff | hist) . . (-190) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Prep)
- 18:24, 28 February 2022 (diff | hist) . . (+157) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 18:22, 28 February 2022 (diff | hist) . . (+25) . . N File:1X70 715.png (1X70 ligand w/ Hydrogens.) (top)
- 18:15, 28 February 2022 (diff | hist) . . (+33) . . N File:1X70 715 no H.png (The ligand for 1X70 w/o Hydrogen.) (top)
- 18:11, 28 February 2022 (diff | hist) . . (+851) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 18:10, 28 February 2022 (diff | hist) . . (+135) . . N File:1X70 715 complexed.png (1 monomer of 1X70 with all waters and non standard residues deleted except for the ligand 715, which is colored light blue for clarity.) (top)
- 17:55, 28 February 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 17:54, 28 February 2022 (diff | hist) . . (+77) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 17:54, 28 February 2022 (diff | hist) . . (+53) . . N File:1X70 fetched.png (The biological assembly 1 of 1X70 straight from RCSB.) (top)
- 17:50, 28 February 2022 (diff | hist) . . (+2) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 17:46, 28 February 2022 (diff | hist) . . (+79) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 17:45, 28 February 2022 (diff | hist) . . (-18) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 17:45, 28 February 2022 (diff | hist) . . (+8) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 17:38, 28 February 2022 (diff | hist) . . (+74) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Spheres)
- 17:37, 28 February 2022 (diff | hist) . . (+980) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 15:20, 28 February 2022 (diff | hist) . . (0) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 15:20, 28 February 2022 (diff | hist) . . (+1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 15:20, 28 February 2022 (diff | hist) . . (+64) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 15:19, 28 February 2022 (diff | hist) . . (+24) . . N File:1X70 surface.png (The VDW surface of 1X70.)
- 15:17, 28 February 2022 (diff | hist) . . (+44) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 15:14, 28 February 2022 (diff | hist) . . (+1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 15:09, 28 February 2022 (diff | hist) . . (+87) . . N File:1X70 spheres.png (The spheres generated from the dms file that represent empty space through the protein.) (top)
- 17:27, 23 February 2022 (diff | hist) . . (+1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Spheres)
- 17:26, 23 February 2022 (diff | hist) . . (-3) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→System Preparation)
- 17:26, 23 February 2022 (diff | hist) . . (-8) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Rescoring Molecules)
- 17:25, 23 February 2022 (diff | hist) . . (-33) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Generating the grid)
- 17:25, 23 February 2022 (diff | hist) . . (+1) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Making the box)
- 17:25, 23 February 2022 (diff | hist) . . (-4) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Generating the box)
- 17:24, 23 February 2022 (diff | hist) . . (+15) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Energy Minimization)
- 17:23, 23 February 2022 (diff | hist) . . (-7) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Generation of the Box and Grid)
- 17:23, 23 February 2022 (diff | hist) . . (-31) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Surface Generation & Sphere Selection)
- 17:22, 23 February 2022 (diff | hist) . . (+35) . . 2022 DOCK tutorial 3 with PDBID 1X70 (→Ligand Preparation)
- 17:15, 23 February 2022 (diff | hist) . . (+889) . . 2022 DOCK tutorial 3 with PDBID 1X70
- 16:34, 23 February 2022 (diff | hist) . . (+77) . . N 2022 DOCK tutorial 3 with PDBID 1X70 (Created page with " Preparing Charged Mol2 for Ligand, Receptor: Step 1: Fetch 1X70 in Chimera")
