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(Latest | Earliest) View (newer 100) (older 100) (20 | 50 | 100 | 250 | 500).
- 15:07, 9 March 2020 (diff | hist) . . (+8) . . DOCK DN Tutorials
- 15:07, 9 March 2020 (diff | hist) . . (+168) . . DOCK DN Tutorials
- 12:52, 5 February 2020 (diff | hist) . . (+169) . . DOCK VS Tutorials
- 14:14, 3 February 2020 (diff | hist) . . (+71) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output) (top)
- 14:11, 3 February 2020 (diff | hist) . . (0) . . N File:Fps.min.output footprint scored rigid3-compressor-min.jpg (top)
- 13:26, 23 January 2020 (diff | hist) . . (-1) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output)
- 13:20, 23 January 2020 (diff | hist) . . (+1) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output)
- 13:19, 23 January 2020 (diff | hist) . . (+21) . . N File:Fps.min.output footprint scored rigid2.png (new footprint example) (top)
- 13:15, 23 January 2020 (diff | hist) . . (0) . . File:Fps.min.output footprint scored rigid.png (Stelehany uploaded a new version of File:Fps.min.output footprint scored rigid.png) (top)
- 13:13, 23 January 2020 (diff | hist) . . (+94) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output)
- 13:11, 23 January 2020 (diff | hist) . . (+45) . . N File:Fps.min.output footprint scored rigid.png (example output from footprint plotting script)
- 13:08, 23 January 2020 (diff | hist) . . (-3) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output)
- 13:07, 23 January 2020 (diff | hist) . . (+180) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output)
- 13:05, 23 January 2020 (diff | hist) . . (+3,389) . . Analysis Tools Repository (→Single Footprint Plot using DOCK output)
- 12:27, 22 January 2020 (diff | hist) . . (-2) . . 2020 AMS-536 Spring
- 12:27, 22 January 2020 (diff | hist) . . (0) . . 2020 AMS-536 Spring
- 12:26, 22 January 2020 (diff | hist) . . (+154) . . 2020 AMS-536 Spring
- 12:23, 22 January 2020 (diff | hist) . . (+103) . . 2020 AMS-536 Spring
- 12:08, 22 January 2020 (diff | hist) . . (0) . . 2019 AMS-536 Spring (top)
- 12:07, 22 January 2020 (diff | hist) . . (-87) . . 2020 AMS-536 Spring
- 11:57, 22 January 2020 (diff | hist) . . (+7,580) . . N 2020 AMS-536 Spring (Created page with "<br> {| align="center" border="2" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:80%" |- style="background:white" ! style="width:10%" | '''Ins...")
- 11:56, 22 January 2020 (diff | hist) . . (+25) . . AMS-536 Molecular Modeling of Biological Molecules (→Course Schedules)
- 11:04, 21 January 2020 (diff | hist) . . (+175) . . Analysis Tools Repository
- 10:48, 15 January 2020 (diff | hist) . . (+140) . . Analysis Tools Repository (→Analyses)
- 10:19, 15 January 2020 (diff | hist) . . (+74) . . Analysis Tools Repository (→How to add new analysis/what should each entry contain)
- 10:18, 15 January 2020 (diff | hist) . . (+648) . . Analysis Tools Repository (→What is this repository?)
- 10:10, 15 January 2020 (diff | hist) . . (+396) . . Analysis Tools Repository (→Using this repository)
- 11:48, 14 November 2019 (diff | hist) . . (+57) . . Rizzo Lab Publications
- 12:52, 12 November 2019 (diff | hist) . . (+138) . . Rizzo Lab Publications
- 16:01, 1 November 2019 (diff | hist) . . (+165) . . DOCK DN Development Goals (→List of features/ideas for future releases:)
- 12:22, 23 September 2019 (diff | hist) . . (+68) . . DOCK VS Development Goals
- 12:21, 23 September 2019 (diff | hist) . . (+141) . . DOCK VS Development Goals
- 12:14, 23 September 2019 (diff | hist) . . (+84) . . DOCK VS Development Goals
- 12:30, 13 February 2019 (diff | hist) . . (-1) . . Rizzo Lab Publications
- 12:29, 13 February 2019 (diff | hist) . . (+49) . . Rizzo Lab Publications
- 12:27, 13 February 2019 (diff | hist) . . (+41) . . Rizzo Lab Publications
- 12:25, 13 February 2019 (diff | hist) . . (+3,348) . . Rizzo Lab Publications
- 16:35, 11 February 2019 (diff | hist) . . (0) . . N File:NITD008 structure.png (top)
- 14:31, 7 February 2019 (diff | hist) . . (+1) . . 2019 AMS-536 Spring (→Tutorials, Software Links, and Other Relevant Class Information)
- 14:30, 7 February 2019 (diff | hist) . . (+117) . . 2019 AMS-536 Spring (→Tutorials, Software Links, and Other Relevant Class Information)
- 12:47, 7 February 2019 (diff | hist) . . (+96) . . DOCK DN Development Goals (→Current Coding Progress:)
- 11:39, 7 February 2019 (diff | hist) . . (+43) . . N DOCK VS Development Goals (Created page with "* Remove secondary scoring function options")
- 11:34, 7 February 2019 (diff | hist) . . (+3) . . DOCK DN Development Goals (→Current Coding Progress:)
- 11:32, 7 February 2019 (diff | hist) . . (+45) . . DOCK DN Development Goals (→List of features/ideas for future releases:)
- 11:31, 7 February 2019 (diff | hist) . . (+166) . . DOCK DN Development Goals (→List of features/ideas for future releases:)
- 11:26, 7 February 2019 (diff | hist) . . (+480) . . N DOCK Release Objectives (Created page with "DOCK 6.10 To do list *(1)Update the FMS and FPS test cases *(2)Change variables in the FMS and FPS *(3)Merge all the changes with the latest CVS version for testing *(4)Up...")
- 10:48, 6 February 2019 (diff | hist) . . (+153) . . Chimera (top)
- 10:47, 6 February 2019 (diff | hist) . . (+215) . . Chimera
- 10:46, 6 February 2019 (diff | hist) . . (+153) . . 2019 AMS-536 Spring
- 10:44, 6 February 2019 (diff | hist) . . (+426) . . 2019 AMS-536 Spring
- 11:59, 5 February 2019 (diff | hist) . . (-29) . . Rizzo Lab Information and Tutorials
- 11:58, 5 February 2019 (diff | hist) . . (-236) . . Advanced Dock Utilities/Information (top)
- 11:58, 5 February 2019 (diff | hist) . . (+132) . . N General Dock Utilities/Info (Created page with "*DOCK Installation *Optimize Polar Hydrogens *Footprint Plot Visualization *Sphere Generation *Scoring Functions") (top)
- 11:58, 5 February 2019 (diff | hist) . . (+99) . . N DOCK DN Utilities/Info (Created page with "*Fragment Library Generation *Make Unique script usage *Analog Library - Pubchem & Zinc") (top)
- 11:57, 5 February 2019 (diff | hist) . . (+31) . . N DOCK VS Utilities/Info (Created page with "*Virtual Screening Protocol") (top)
- 11:57, 5 February 2019 (diff | hist) . . (+261) . . Advanced Dock Utilities/Information
- 11:56, 5 February 2019 (diff | hist) . . (-23) . . Rizzo Lab Information and Tutorials
- 11:55, 5 February 2019 (diff | hist) . . (+23) . . General Dock Utilities (top)
- 11:55, 5 February 2019 (diff | hist) . . (+362) . . N Advanced Dock Utilities/Information (Created page with "This page outlines advanced preparation and post processing techniques used regularly in our lab {| cellpadding=0 width=90% *DOCK_VS Utilities - Traditional Virtual Screen...")
- 11:54, 5 February 2019 (diff | hist) . . (+41) . . Rizzo Lab Information and Tutorials
- 11:54, 5 February 2019 (diff | hist) . . (-12) . . Rizzo Lab Information and Tutorials
- 11:53, 5 February 2019 (diff | hist) . . (+12) . . Rizzo Lab Information and Tutorials
- 11:52, 5 February 2019 (diff | hist) . . (-2) . . Rizzo Lab Members and Contact Information
- 11:51, 5 February 2019 (diff | hist) . . (+98) . . Rizzo Lab Members and Contact Information
- 11:48, 5 February 2019 (diff | hist) . . (-63) . . Rizzo Lab Information and Tutorials
- 11:48, 5 February 2019 (diff | hist) . . (+63) . . Legacy Info
- 11:45, 5 February 2019 (diff | hist) . . (-45) . . Rizzo Lab Information and Tutorials
- 11:45, 5 February 2019 (diff | hist) . . (+21) . . N DOCK VS Parameters (Created page with "*Sampling Methods") (top)
- 11:44, 5 February 2019 (diff | hist) . . (+23) . . General Dock Utilities
- 11:43, 5 February 2019 (diff | hist) . . (-156) . . Rizzo Lab Information and Tutorials
- 11:43, 5 February 2019 (diff | hist) . . (+86) . . N General Dock Utilities (Created page with "*DOCK Installation *Optimize Polar Hydrogens *Footprint Plot Visualization")
- 11:43, 5 February 2019 (diff | hist) . . (+31) . . N DOCK VS Utilities (Created page with "*Virtual Screening Protocol") (top)
- 11:42, 5 February 2019 (diff | hist) . . (+37) . . DOCK DN Utilities (top)
- 11:41, 5 February 2019 (diff | hist) . . (-93) . . Rizzo Lab Information and Tutorials
- 11:41, 5 February 2019 (diff | hist) . . (+62) . . N DOCK DN Utilities (Created page with "*Fragment Library Generation *Make Unique script usage")
- 11:41, 5 February 2019 (diff | hist) . . (+362) . . N Advanced Dock Utilities (Created page with "This page outlines advanced preparation and post processing techniques used regularly in our lab {| cellpadding=0 width=90% *DOCK_VS Utilities - Traditional Virtual Screen...") (top)
- 11:39, 5 February 2019 (diff | hist) . . (+29) . . Rizzo Lab Information and Tutorials
- 11:38, 5 February 2019 (diff | hist) . . (-30) . . De Novo Design (DOCK DN) (top)
- 11:38, 5 February 2019 (diff | hist) . . (-40) . . Rizzo Lab Information and Tutorials
- 11:37, 5 February 2019 (diff | hist) . . (+104) . . N DOCK GA Input File(s) (Created page with "*Example of an Single Molecule Evolution Input file *Example of an Ensemble Evolution Input file") (top)
- 11:37, 5 February 2019 (diff | hist) . . (+8,420) . . N DOCK DN Input File(s) (Created page with "This is a standard input file for de novo DOCK6 using multigrid score through descriptor score. conformer_search_type denovo dn_fragl...") (top)
- 11:36, 5 February 2019 (diff | hist) . . (+273) . . N Example Input Files (Created page with "{| cellpadding=0 width=90% *DOCK_VS Input File(s) - Traditional Virtual Screening Development *DOCK_DN Input File(s) - De Novo Design Development *DOCK_GA Input File...") (top)
- 11:35, 5 February 2019 (diff | hist) . . (+25) . . Rizzo Lab Information and Tutorials
- 11:35, 5 February 2019 (diff | hist) . . (-20) . . De Novo Design (DOCK DN)
- 11:34, 5 February 2019 (diff | hist) . . (-28) . . Small Molecule Evolution (DOCK GA) (top)
- 11:34, 5 February 2019 (diff | hist) . . (+4,724) . . N DOCK GA Parameters (Created page with " {| class="wikitable" |+ |- ! Parameter ! Description ! Default Value |- | ga_molecule_file | Initial molecule ensemble in mol2 format || - |- | ga_fraglib_scaffold_file |...")
- 11:33, 5 February 2019 (diff | hist) . . (+3,030) . . N DOCK DN Parameters (Created page with " {| class="wikitable" |- ! Parameter ! Description ! Default |- | conformer_search_type | Choose between flex, rigid, denovo, or genetic | Flex |- | dn_fraglib_scaffold_file |...")
- 11:33, 5 February 2019 (diff | hist) . . (+259) . . N Parameter List/Explanations (Created page with "{| cellpadding=0 width=90% *DOCK_VS Parameters - Traditional Virtual Screening Parameters *DOCK_DN Parameters - De Novo Design Parameters *DOCK_GA Parameters - Ge...")
- 11:31, 5 February 2019 (diff | hist) . . (+33) . . Rizzo Lab Information and Tutorials
- 11:30, 5 February 2019 (diff | hist) . . (-32) . . Small Molecule Evolution (DOCK GA)
- 11:30, 5 February 2019 (diff | hist) . . (+1,083) . . N DOCK GA Development Goals (Created page with "==To Do List== -xover- guided based on score 1. good v good 2. bad v good 3. bad v bad nonexhaustive xover (pick subset of xover based on probability) 2-3 point xove...")
- 11:30, 5 February 2019 (diff | hist) . . (-32) . . De Novo Design (DOCK DN)
- 11:29, 5 February 2019 (diff | hist) . . (+6,743) . . N DOCK DN Development Goals (Created page with "This is the Rizzo lab wiki page for coordinating bugs and progress on the de novo project. <br> === Valgrind clean version of the code on cluster that Rizzo lab should be usi...")
- 11:29, 5 February 2019 (diff | hist) . . (-13) . . Rizzo Lab Information and Tutorials
- 11:29, 5 February 2019 (diff | hist) . . (+480) . . N General Dock Development Goals (Created page with "DOCK 6.10 To do list *(1)Update the FMS and FPS test cases *(2)Change variables in the FMS and FPS *(3)Merge all the changes with the latest CVS version for testing *(4)Up...") (top)
- 11:24, 5 February 2019 (diff | hist) . . (+22) . . Rizzo Lab Information and Tutorials
- 11:23, 5 February 2019 (diff | hist) . . (-59) . . Rizzo Lab Information and Tutorials
- 11:21, 5 February 2019 (diff | hist) . . (0) . . Rizzo Lab Information and Tutorials
- 11:19, 5 February 2019 (diff | hist) . . (+12) . . DOCK VS Tutorials
- 13:12, 4 February 2019 (diff | hist) . . (+91) . . Testset Protocols (top)
(Latest | Earliest) View (newer 100) (older 100) (20 | 50 | 100 | 250 | 500).
