User contributions

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• 08:46, 31 July 2020 (diff | hist) . . (+579)‎ . . N AutoDock4 Benchmark Results ‎ (Created page with "{| align="center" border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:95%" |- style="background:cornflowerblue" | <center>'''Date, Autho...")
• 08:45, 31 July 2020 (diff | hist) . . (+33)‎ . . Rizzo Lab Information and Tutorials ‎ (→‎AutoDock4)
• 13:12, 28 July 2020 (diff | hist) . . (+911)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎VI.Rescoring in DOCK6)
• 12:39, 28 July 2020 (diff | hist) . . (+210)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 12:36, 28 July 2020 (diff | hist) . . (+761)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 10:58, 28 July 2020 (diff | hist) . . (+27)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 10:52, 28 July 2020 (diff | hist) . . (+1,004)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎V.Docking Ligands)
• 13:46, 22 July 2020 (diff | hist) . . (-102)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 09:25, 22 July 2020 (diff | hist) . . (+68)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 09:24, 22 July 2020 (diff | hist) . . (0)‎ . . N File:Charges to Ligand.PNG ‎ (top)
• 09:23, 22 July 2020 (diff | hist) . . (+87)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 09:22, 22 July 2020 (diff | hist) . . (+100)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 09:18, 22 July 2020 (diff | hist) . . (0)‎ . . N File:Problematic Ligands.png ‎ (top)
• 09:17, 22 July 2020 (diff | hist) . . (+45)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 09:13, 22 July 2020 (diff | hist) . . (+174)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 13:46, 21 July 2020 (diff | hist) . . (+112)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎III.Preparing Receptors and Ligands)
• 13:45, 21 July 2020 (diff | hist) . . (+117)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎IV.Preparing Grids)
• 13:22, 21 July 2020 (diff | hist) . . (+997)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎IV.Preparing Grids)
• 13:10, 21 July 2020 (diff | hist) . . (+696)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 13:04, 21 July 2020 (diff | hist) . . (+893)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎V.Docking Ligands)
• 12:32, 21 July 2020 (diff | hist) . . (+151)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 10:20, 21 July 2020 (diff | hist) . . (+77)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎Trouble Shooting)
• 10:19, 21 July 2020 (diff | hist) . . (+743)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 09:31, 21 July 2020 (diff | hist) . . (+1,012)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎IV.Preparing Grids)
• 15:11, 20 July 2020 (diff | hist) . . (+1,160)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 14:02, 17 July 2020 (diff | hist) . . (+15)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎I. Introduction)
• 13:55, 17 July 2020 (diff | hist) . . (+869)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 13:54, 17 July 2020 (diff | hist) . . (+22)‎ . . AutoDock4 Pose Reproduction Tutorial ‎
• 13:53, 17 July 2020 (diff | hist) . . (+205)‎ . . AutoDock4 Pose Reproduction Tutorial ‎ (→‎II.Prepping Directories)
• 12:01, 17 July 2020 (diff | hist) . . (+845)‎ . . N AutoDock4 Pose Reproduction Tutorial ‎ (Created page with "The purpose of this tutorial is to provide members of the Rizzo lab a way to benchmark the AutoDock4 software to compare the Pose Reproduction success rates against the DOCK6...")
• 11:25, 17 July 2020 (diff | hist) . . (0)‎ . . Rizzo Lab Information and Tutorials ‎ (→‎AutoDock4)
• 11:24, 17 July 2020 (diff | hist) . . (+11)‎ . . Rizzo Lab Information and Tutorials ‎
• 11:23, 17 July 2020 (diff | hist) . . (+37)‎ . . Rizzo Lab Information and Tutorials ‎ (→‎AutoDock4)
• 10:47, 16 July 2020 (diff | hist) . . (+46)‎ . . Rizzo Lab Information and Tutorials ‎
• 14:48, 15 July 2020 (diff | hist) . . (-69)‎ . . DOCK6 POSE Reproduction ‎ (→‎3.Performing Pose Reproduction)
• 14:48, 15 July 2020 (diff | hist) . . (-5)‎ . . DOCK6 POSE Reproduction ‎ (→‎3.Performing Pose Reproduction)
• 14:47, 15 July 2020 (diff | hist) . . (+1)‎ . . DOCK6 POSE Reproduction ‎ (→‎4.Generating a CSV and DAT file of Results)
• 14:47, 15 July 2020 (diff | hist) . . (-6)‎ . . DOCK6 POSE Reproduction ‎ (→‎4.Generating a CSV and DAT file of Results)
• 14:47, 15 July 2020 (diff | hist) . . (+1)‎ . . DOCK6 POSE Reproduction ‎ (→‎Files in 121P directory)
• 14:47, 15 July 2020 (diff | hist) . . (-7)‎ . . DOCK6 POSE Reproduction ‎ (→‎3.Performing Pose Reproduction)
• 14:45, 15 July 2020 (diff | hist) . . (-18)‎ . . DOCK6 POSE Reproduction ‎ (→‎II. Preparing DOCK directories)
• 14:27, 15 July 2020 (diff | hist) . . (+28)‎ . . DOCK6 POSE Reproduction ‎ (→‎5.Generating a graphs of the results)
• 14:27, 15 July 2020 (diff | hist) . . (0)‎ . . N File:FOR Tutorial 3.png ‎ (top)
• 14:26, 15 July 2020 (diff | hist) . . (+28)‎ . . DOCK6 POSE Reproduction ‎ (→‎5.Generating a graphs of the results)
• 14:25, 15 July 2020 (diff | hist) . . (0)‎ . . N File:FOR Tutorial 2.png ‎ (top)
• 14:19, 15 July 2020 (diff | hist) . . (+139)‎ . . DOCK6 POSE Reproduction ‎ (→‎4.Generating a CSV and DAT file of Results)
• 13:25, 15 July 2020 (diff | hist) . . (0)‎ . . DOCK6 POSE Reproduction ‎ (→‎I. Introduction)
• 13:24, 15 July 2020 (diff | hist) . . (0)‎ . . N File:Pose Reproduction Intro.JPG ‎ (top)
• 13:22, 15 July 2020 (diff | hist) . . (+38)‎ . . DOCK6 POSE Reproduction ‎ (→‎I. Introduction)
• 12:46, 15 July 2020 (diff | hist) . . (-13)‎ . . DOCK6 POSE Reproduction ‎ (→‎I. Introduction)
• 11:22, 15 July 2020 (diff | hist) . . (+804)‎ . . Ligand Enrichment Tutorial ‎ (→‎IV.Ligand Enrichment Analysis) (top)
• 10:54, 15 July 2020 (diff | hist) . . (+2)‎ . . Ligand Enrichment Tutorial ‎ (→‎IV.Ligand Enrichment Analysis)
• 10:54, 15 July 2020 (diff | hist) . . (+45)‎ . . Ligand Enrichment Tutorial ‎ (→‎IV.Ligand Enrichment Analysis)
• 10:51, 15 July 2020 (diff | hist) . . (0)‎ . . N File:1Q4X ligand enrichment DOCK6.9.png ‎ (top)
• 10:51, 15 July 2020 (diff | hist) . . (+590)‎ . . Ligand Enrichment Tutorial ‎ (→‎IV.Ligand Enrichment Analysis)
• 10:28, 15 July 2020 (diff | hist) . . (+13)‎ . . Ligand Enrichment Tutorial ‎ (→‎II.Prepping systems)
• 10:18, 15 July 2020 (diff | hist) . . (-6)‎ . . Ligand Enrichment Tutorial ‎ (→‎II.Prepping systems)
• 10:04, 15 July 2020 (diff | hist) . . (+5,570)‎ . . Ligand Enrichment Tutorial ‎ (→‎III.Docking molecules)
• 09:42, 15 July 2020 (diff | hist) . . (+5,177)‎ . . Ligand Enrichment Tutorial ‎
• 17:17, 14 July 2020 (diff | hist) . . (+1,137)‎ . . Ligand Enrichment Tutorial ‎
• 16:26, 14 July 2020 (diff | hist) . . (+1,647)‎ . . N Ligand Enrichment Tutorial ‎ (Created page with "The purpose of this tutorial is to develop a uniform method to test ligand enrichment across the Rizzo lab with the DOCK software. ==I.Introduction== Ligand Enrichment...")
• 11:39, 14 July 2020 (diff | hist) . . (-9)‎ . . Rizzo Lab Information and Tutorials ‎
• 11:38, 14 July 2020 (diff | hist) . . (+18)‎ . . Rizzo Lab Information and Tutorials ‎
• 11:36, 14 July 2020 (diff | hist) . . (+23)‎ . . Rizzo Lab Information and Tutorials ‎
• 11:35, 14 July 2020 (diff | hist) . . (+1,964)‎ . . DOCK6 POSE Reproduction ‎
• 09:57, 14 July 2020 (diff | hist) . . (+1,581)‎ . . N DOCK6 POSE Reproduction ‎ (Created page with "The purpose of this tutorial is to provide people with instructions on how to perform a commonly used test, pose reproduction that evaluates DOCK6's ability to reproduce known...")
• 08:41, 14 July 2020 (diff | hist) . . (+29)‎ . . Rizzo Lab Information and Tutorials ‎
• 09:43, 4 May 2020 (diff | hist) . . (-1)‎ . . DOCK VS Benchmarking ‎
• 09:43, 4 May 2020 (diff | hist) . . (+25)‎ . . DOCK VS Benchmarking ‎
• 09:39, 4 May 2020 (diff | hist) . . (-3)‎ . . DOCK VS Benchmarking ‎
• 09:38, 4 May 2020 (diff | hist) . . (+222)‎ . . DOCK VS Benchmarking ‎
• 15:51, 20 April 2020 (diff | hist) . . (+201)‎ . . 2020 Denovo tutorial 1 with PDBID 3VJK ‎ (→‎Focus Denovo) (top)
• 15:49, 20 April 2020 (diff | hist) . . (+5,652)‎ . . 2020 Denovo tutorial 1 with PDBID 3VJK ‎
• 15:36, 20 April 2020 (diff | hist) . . (+5,140)‎ . . 2020 Denovo tutorial 1 with PDBID 3VJK ‎ (→‎Focus Denovo)
• 15:32, 20 April 2020 (diff | hist) . . (+1)‎ . . 2020 Denovo tutorial 1 with PDBID 3VJK ‎ (→‎Focus Denovo)
• 15:32, 20 April 2020 (diff | hist) . . (+90)‎ . . 2020 Denovo tutorial 1 with PDBID 3VJK ‎ (→‎Focus Denovo)
• 15:29, 20 April 2020 (diff | hist) . . (+16)‎ . . 2020 Denovo tutorial 1 with PDBID 3VJK ‎
• 12:03, 6 April 2020 (diff | hist) . . (+26,981)‎ . . N 2020 Denovo tutorial 2 with PDBID 2GQG ‎ (Created page with "=I. Focused Growth= First, we will attempt to rebuild the original ligand from a small fragment library generated from only the original ligand itself. ===Fragment Library==...") (top)
• 00:47, 4 April 2020 (diff | hist) . . (0)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (top)
• 00:47, 4 April 2020 (diff | hist) . . (0)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎
• 00:46, 4 April 2020 (diff | hist) . . (0)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:46, 4 April 2020 (diff | hist) . . (+3)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:40, 4 April 2020 (diff | hist) . . (+79)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Minimization and Equilibration)
• 00:40, 4 April 2020 (diff | hist) . . (+1)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Minimization and Equilibration)
• 00:39, 4 April 2020 (diff | hist) . . (+6)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Minimization and Equilibration)
• 00:39, 4 April 2020 (diff | hist) . . (+830)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Minimization and Equilibration)
• 00:35, 4 April 2020 (diff | hist) . . (+2)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎
• 00:35, 4 April 2020 (diff | hist) . . (+2)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎
• 00:34, 4 April 2020 (diff | hist) . . (-6)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎
• 00:34, 4 April 2020 (diff | hist) . . (0)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎minimization and equilibration)
• 00:33, 4 April 2020 (diff | hist) . . (+4)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎minimization and equilibration)
• 00:33, 4 April 2020 (diff | hist) . . (+9,734)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎
• 00:24, 4 April 2020 (diff | hist) . . (-128)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:24, 4 April 2020 (diff | hist) . . (+2)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:23, 4 April 2020 (diff | hist) . . (-1)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:22, 4 April 2020 (diff | hist) . . (-2)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:19, 4 April 2020 (diff | hist) . . (+2)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:19, 4 April 2020 (diff | hist) . . (+568)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:11, 4 April 2020 (diff | hist) . . (+234)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)
• 00:10, 4 April 2020 (diff | hist) . . (+426)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap)

(Latest | Earliest) View (newer 100) (older 100) (20 | 50 | 100 | 250 | 500).