User contributions
(Latest | Earliest) View (newer 100) (older 100) (20 | 50 | 100 | 250 | 500).
- 09:46, 31 July 2020 (diff | hist) . . (+579) . . N AutoDock4 Benchmark Results (Created page with "{| align="center" border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:95%" |- style="background:cornflowerblue" | <center>'''Date, Autho...")
- 09:45, 31 July 2020 (diff | hist) . . (+33) . . Rizzo Lab Information and Tutorials (→AutoDock4)
- 14:12, 28 July 2020 (diff | hist) . . (+911) . . AutoDock4 Pose Reproduction Tutorial (→VI.Rescoring in DOCK6)
- 13:39, 28 July 2020 (diff | hist) . . (+210) . . AutoDock4 Pose Reproduction Tutorial
- 13:36, 28 July 2020 (diff | hist) . . (+761) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 11:58, 28 July 2020 (diff | hist) . . (+27) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 11:52, 28 July 2020 (diff | hist) . . (+1,004) . . AutoDock4 Pose Reproduction Tutorial (→V.Docking Ligands)
- 14:46, 22 July 2020 (diff | hist) . . (-102) . . AutoDock4 Pose Reproduction Tutorial
- 10:25, 22 July 2020 (diff | hist) . . (+68) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:24, 22 July 2020 (diff | hist) . . (0) . . N File:Charges to Ligand.PNG (top)
- 10:23, 22 July 2020 (diff | hist) . . (+87) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:22, 22 July 2020 (diff | hist) . . (+100) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:18, 22 July 2020 (diff | hist) . . (0) . . N File:Problematic Ligands.png (top)
- 10:17, 22 July 2020 (diff | hist) . . (+45) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:13, 22 July 2020 (diff | hist) . . (+174) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 14:46, 21 July 2020 (diff | hist) . . (+112) . . AutoDock4 Pose Reproduction Tutorial (→III.Preparing Receptors and Ligands)
- 14:45, 21 July 2020 (diff | hist) . . (+117) . . AutoDock4 Pose Reproduction Tutorial (→IV.Preparing Grids)
- 14:22, 21 July 2020 (diff | hist) . . (+997) . . AutoDock4 Pose Reproduction Tutorial (→IV.Preparing Grids)
- 14:10, 21 July 2020 (diff | hist) . . (+696) . . AutoDock4 Pose Reproduction Tutorial
- 14:04, 21 July 2020 (diff | hist) . . (+893) . . AutoDock4 Pose Reproduction Tutorial (→V.Docking Ligands)
- 13:32, 21 July 2020 (diff | hist) . . (+151) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 11:20, 21 July 2020 (diff | hist) . . (+77) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 11:19, 21 July 2020 (diff | hist) . . (+743) . . AutoDock4 Pose Reproduction Tutorial
- 10:31, 21 July 2020 (diff | hist) . . (+1,012) . . AutoDock4 Pose Reproduction Tutorial (→IV.Preparing Grids)
- 16:11, 20 July 2020 (diff | hist) . . (+1,160) . . AutoDock4 Pose Reproduction Tutorial
- 15:02, 17 July 2020 (diff | hist) . . (+15) . . AutoDock4 Pose Reproduction Tutorial (→I. Introduction)
- 14:55, 17 July 2020 (diff | hist) . . (+869) . . AutoDock4 Pose Reproduction Tutorial
- 14:54, 17 July 2020 (diff | hist) . . (+22) . . AutoDock4 Pose Reproduction Tutorial
- 14:53, 17 July 2020 (diff | hist) . . (+205) . . AutoDock4 Pose Reproduction Tutorial (→II.Prepping Directories)
- 13:01, 17 July 2020 (diff | hist) . . (+845) . . N AutoDock4 Pose Reproduction Tutorial (Created page with "The purpose of this tutorial is to provide members of the Rizzo lab a way to benchmark the AutoDock4 software to compare the Pose Reproduction success rates against the DOCK6...")
- 12:25, 17 July 2020 (diff | hist) . . (0) . . Rizzo Lab Information and Tutorials (→AutoDock4)
- 12:24, 17 July 2020 (diff | hist) . . (+11) . . Rizzo Lab Information and Tutorials
- 12:23, 17 July 2020 (diff | hist) . . (+37) . . Rizzo Lab Information and Tutorials (→AutoDock4)
- 11:47, 16 July 2020 (diff | hist) . . (+46) . . Rizzo Lab Information and Tutorials
- 15:48, 15 July 2020 (diff | hist) . . (-69) . . DOCK6 POSE Reproduction (→3.Performing Pose Reproduction)
- 15:48, 15 July 2020 (diff | hist) . . (-5) . . DOCK6 POSE Reproduction (→3.Performing Pose Reproduction)
- 15:47, 15 July 2020 (diff | hist) . . (+1) . . DOCK6 POSE Reproduction (→4.Generating a CSV and DAT file of Results)
- 15:47, 15 July 2020 (diff | hist) . . (-6) . . DOCK6 POSE Reproduction (→4.Generating a CSV and DAT file of Results)
- 15:47, 15 July 2020 (diff | hist) . . (+1) . . DOCK6 POSE Reproduction (→Files in 121P directory)
- 15:47, 15 July 2020 (diff | hist) . . (-7) . . DOCK6 POSE Reproduction (→3.Performing Pose Reproduction)
- 15:45, 15 July 2020 (diff | hist) . . (-18) . . DOCK6 POSE Reproduction (→II. Preparing DOCK directories)
- 15:27, 15 July 2020 (diff | hist) . . (+28) . . DOCK6 POSE Reproduction (→5.Generating a graphs of the results)
- 15:27, 15 July 2020 (diff | hist) . . (0) . . N File:FOR Tutorial 3.png (top)
- 15:26, 15 July 2020 (diff | hist) . . (+28) . . DOCK6 POSE Reproduction (→5.Generating a graphs of the results)
- 15:25, 15 July 2020 (diff | hist) . . (0) . . N File:FOR Tutorial 2.png (top)
- 15:19, 15 July 2020 (diff | hist) . . (+139) . . DOCK6 POSE Reproduction (→4.Generating a CSV and DAT file of Results)
- 14:25, 15 July 2020 (diff | hist) . . (0) . . DOCK6 POSE Reproduction (→I. Introduction)
- 14:24, 15 July 2020 (diff | hist) . . (0) . . N File:Pose Reproduction Intro.JPG (top)
- 14:22, 15 July 2020 (diff | hist) . . (+38) . . DOCK6 POSE Reproduction (→I. Introduction)
- 13:46, 15 July 2020 (diff | hist) . . (-13) . . DOCK6 POSE Reproduction (→I. Introduction)
- 12:22, 15 July 2020 (diff | hist) . . (+804) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:54, 15 July 2020 (diff | hist) . . (+2) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:54, 15 July 2020 (diff | hist) . . (+45) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:51, 15 July 2020 (diff | hist) . . (0) . . N File:1Q4X ligand enrichment DOCK6.9.png (top)
- 11:51, 15 July 2020 (diff | hist) . . (+590) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:28, 15 July 2020 (diff | hist) . . (+13) . . Database Enrichment SB2024 V1 DOCK6.10 A (→II.Prepping systems)
- 11:18, 15 July 2020 (diff | hist) . . (-6) . . Database Enrichment SB2024 V1 DOCK6.10 A (→II.Prepping systems)
- 11:04, 15 July 2020 (diff | hist) . . (+5,570) . . Database Enrichment SB2024 V1 DOCK6.10 A (→III.Docking molecules)
- 10:42, 15 July 2020 (diff | hist) . . (+5,177) . . Database Enrichment SB2024 V1 DOCK6.10 A
- 18:17, 14 July 2020 (diff | hist) . . (+1,137) . . Database Enrichment SB2024 V1 DOCK6.10 A
- 17:26, 14 July 2020 (diff | hist) . . (+1,647) . . N Database Enrichment SB2024 V1 DOCK6.10 A (Created page with "The purpose of this tutorial is to develop a uniform method to test ligand enrichment across the Rizzo lab with the DOCK software. ==I.Introduction== Ligand Enrichment...")
- 12:39, 14 July 2020 (diff | hist) . . (-9) . . Rizzo Lab Information and Tutorials
- 12:38, 14 July 2020 (diff | hist) . . (+18) . . Rizzo Lab Information and Tutorials
- 12:36, 14 July 2020 (diff | hist) . . (+23) . . Rizzo Lab Information and Tutorials
- 12:35, 14 July 2020 (diff | hist) . . (+1,964) . . DOCK6 POSE Reproduction
- 10:57, 14 July 2020 (diff | hist) . . (+1,581) . . N DOCK6 POSE Reproduction (Created page with "The purpose of this tutorial is to provide people with instructions on how to perform a commonly used test, pose reproduction that evaluates DOCK6's ability to reproduce known...")
- 09:41, 14 July 2020 (diff | hist) . . (+29) . . Rizzo Lab Information and Tutorials
- 10:43, 4 May 2020 (diff | hist) . . (-1) . . DOCK VS Benchmarking
- 10:43, 4 May 2020 (diff | hist) . . (+25) . . DOCK VS Benchmarking
- 10:39, 4 May 2020 (diff | hist) . . (-3) . . DOCK VS Benchmarking
- 10:38, 4 May 2020 (diff | hist) . . (+222) . . DOCK VS Benchmarking
- 16:51, 20 April 2020 (diff | hist) . . (+201) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo) (top)
- 16:49, 20 April 2020 (diff | hist) . . (+5,652) . . 2020 Denovo tutorial 1 with PDBID 3VJK
- 16:36, 20 April 2020 (diff | hist) . . (+5,140) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo)
- 16:32, 20 April 2020 (diff | hist) . . (+1) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo)
- 16:32, 20 April 2020 (diff | hist) . . (+90) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo)
- 16:29, 20 April 2020 (diff | hist) . . (+16) . . 2020 Denovo tutorial 1 with PDBID 3VJK
- 13:03, 6 April 2020 (diff | hist) . . (+26,981) . . N 2020 Denovo tutorial 2 with PDBID 2GQG (Created page with "=I. Focused Growth= First, we will attempt to rebuild the original ligand from a small fragment library generated from only the original ligand itself. ===Fragment Library==...") (top)
- 01:47, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:47, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:46, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:46, 4 April 2020 (diff | hist) . . (+3) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:40, 4 April 2020 (diff | hist) . . (+79) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:40, 4 April 2020 (diff | hist) . . (+1) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:39, 4 April 2020 (diff | hist) . . (+6) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:39, 4 April 2020 (diff | hist) . . (+830) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:35, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:35, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:34, 4 April 2020 (diff | hist) . . (-6) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:34, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK (→minimization and equilibration)
- 01:33, 4 April 2020 (diff | hist) . . (+4) . . 2020 AMBER tutorial with PDBID 3VJK (→minimization and equilibration)
- 01:33, 4 April 2020 (diff | hist) . . (+9,734) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:24, 4 April 2020 (diff | hist) . . (-128) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:24, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:23, 4 April 2020 (diff | hist) . . (-1) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:22, 4 April 2020 (diff | hist) . . (-2) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:19, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:19, 4 April 2020 (diff | hist) . . (+568) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:11, 4 April 2020 (diff | hist) . . (+234) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:10, 4 April 2020 (diff | hist) . . (+426) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
(Latest | Earliest) View (newer 100) (older 100) (20 | 50 | 100 | 250 | 500).
