DOCK VS Tutorials

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Disclaimer: The tutorials are written by students learning to use DOCK in a classroom setting. A new dock tutorial is created every year collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB. While effort has been made to ensure the information in the different tutorials are accurate please use at your own risk. They are primarily catalogued here as guides. For additional information please consult the DOCK 6 manual ( for details.

A python script (, which is mentioned in many of the tutorials, is available for download here.