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File list
Date Name Thumbnail Size Description Versions
10:25, 18 February 2009 AnnealingRMSD.bmp (file) 1.1 MB Simulated Annealing of TrpCage vs. Native State (1L2Y) 1
10:30, 16 February 2009 350KRMSD.bmp (file) 719 KB RMSD plot of the backbone of a simulation of TrpCage at 350K vs. the native state. Native state taken from first model of 1L2Y.pdb. 1
10:28, 16 February 2009 350KHbond.bmp (file) 719 KB The Trp H and Arg O interaction in TrpCage. Data from a simulation run at 350K. 1
15:42, 14 February 2009 Trpcagesimhbondgraph.bmp (file) 719 KB Graph of distance between Trp H and Arg O in simulation. Note it never achieves appropriate H-Bond distance. It is 1.87A in the native structure. 1
15:40, 14 February 2009 Trpcagesimhbond.bmp (file) 692 KB Reverted to earlier revision 3
12:11, 14 February 2009 Trpcagenativehbond.bmp (file) 692 KB The trpcage native structure with the hbond between TRP and the ARG oxygen labeled. 1
11:48, 14 February 2009 Trpcagecomparison.bmp (file) 692 KB Comparison of native trpcage (white) vs. simulation trpcage (orange) with the TRP residue highlighted in green 3
11:27, 14 February 2009 Trpcagermsd.bmp (file) 719 KB RMSD of trpcage simulation vs. 1st model in 1L2Y 1