2010 AMBER Tutorial with Biotin and Streptavidin

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Revision as of 21:08, 18 February 2010 by Kehauser (talk | contribs) (General Amber Notes: organizing and clarifying)
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What is AMBER?

Amber - Assisted Model Building with Energy Refinement - is a suite of programs that can be used to simulate and analyze macromolecular systems such as proteins dissolved in water at physiological conditions.

The Amber 10 Manual is the primary resource when trying to learn what variables and keywords mean and what they do. Using Adobe Acrobat to view the file, you can simply search the document for keywords, which saves much time.

There is a mailing list you could sign-up for, as an additional resource.

Biotin Notes

Download PDB Here and view it's details Here.

Streptavidin Notes