2020 AMBER tutorial with PDBID 3VJK

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In this tutorial, we will be modeling the dynamics of the ligand with the receptor using AMBER 16. Amber is a molecular dynamics simulation software package.

Generating Parameters for the simulation

Build system with TLeap

https://ringo.ams.stonybrook.edu/images/5/54/3vjk_wet_10.jpg https://ringo.ams.stonybrook.edu/images/c/c2/3vjk_solvated_wet8.jpg