NAMD to mol2

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cat <<EOFVMD> vmd.in
mol new ${file}_${system}.strip.solv.07md.psf
mol addfile ${file}_${system}.strip.solv.07_to_08md.dcd first $count last $count step 1 molid top
set rec [atomselect top "chain A B C" ]
\$rec writemol2 temp.rec.mol2
quit
EOFVMD
########################################################

/home3/bstrockb/vmd.bin/bin/vmd -dispdev text -e vmd.in >> vmd.out