# Difference between revisions of "Rizzo Lab Downloads"

From Rizzo_Lab

(Added protein families list) |
|||

Line 23: | Line 23: | ||

| Flexibility Subset Lists | | Flexibility Subset Lists | ||

|| [http://george.ams.sunysb.edu/SB2010/7orless.txt 7orless] [http://george.ams.sunysb.edu/SB2010/8to15.txt 8to15] [http://george.ams.sunysb.edu/SB2010/15+.txt 15+] [http://george.ams.sunysb.edu/SB2010/all.txt all] | || [http://george.ams.sunysb.edu/SB2010/7orless.txt 7orless] [http://george.ams.sunysb.edu/SB2010/8to15.txt 8to15] [http://george.ams.sunysb.edu/SB2010/15+.txt 15+] [http://george.ams.sunysb.edu/SB2010/all.txt all] | ||

+ | |} | ||

+ | |||

+ | |||

+ | == SB2010 Protein Families [2010.05.19 Initial Release] == | ||

+ | |||

+ | {| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:40%" | ||

+ | |- style="background:lightblue; width:10%" | ||

+ | ! style="width:40%" !|Protein Family | ||

+ | ! style="width:10%" !|Size | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/REVERSE_TRANSCRIPTASE HIV RT] | ||

+ | | 21 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/FACTOR_XA Factor Xa] | ||

+ | | 41 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/NEURAMINIDASE Neuraminidase] | ||

+ | | 43 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/SIALIDASE Sialidase] | ||

+ | | 11 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/RIBONUCLEASE_T1 Ribonuclease T1] | ||

+ | | 7 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/OMP_DECARBOXYLASE OMP Decarboxylase] | ||

+ | | 7 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/ESTROGEN_RECEPTOR Estrogen Receptor] | ||

+ | | 45 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/T4_LYSOZYME T4 Lysozyme] | ||

+ | | 13 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/BETA-TRYPSIN Beta Trypsin] | ||

+ | | 29 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/STREPTAVIDIN Streptavidin] | ||

+ | | 8 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/THROMBIN Thrombin] | ||

+ | | 37 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/TYROSINE_PHOSPHATASE Tyrosine Phosphatase] | ||

+ | | 20 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/HMG_COA_REDUCTASE HMG COA Reductase] | ||

+ | | 20 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/RIBONUCLEASE_A Ribonuclease A] | ||

+ | | 14 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/TRYPSIN Alpha Trypsin] | ||

+ | | 46 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/COX COX] | ||

+ | | 7 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/ACETYLCHOLINESTERASE Acetylcholinesterase] | ||

+ | | 19 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/HIV_PROTEASE HIV Protease] | ||

+ | | 60 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/THERMOLYSIN Thermolysin] | ||

+ | | 26 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/CARBOXYPEPTIDASE_A Carboxypeptidase A] | ||

+ | | 8 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/MMP Matrix Metalloprotease] | ||

+ | | 14 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/LYSOZYME Egg Lysozyme] | ||

+ | | 14 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/PHOSPHOLIPASE_A2 Phospholipase A2] | ||

+ | | 15 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/THYMIDYLATE_SYNTHASE Thymidylate Synthase] | ||

+ | | 12 | ||

+ | |- | ||

+ | | [http://george.ams.sunysb.edu/SB2010/families.large/CARBONIC_ANHYDRASE Carbonic Anhydrase] | ||

+ | | 29 | ||

|} | |} | ||

Please contact [[Image:Sudipto.email.png]] if you face any problems. | Please contact [[Image:Sudipto.email.png]] if you face any problems. |

## Revision as of 16:29, 20 July 2010

## SB2010 Docking Database [2010.05.19 Initial Release]

Resource | Filename |
---|---|

Receptors, Ligands and Spheres | SB2010.05.19_rec.lig.sph.tar.gz |

Energy and Bump Grids | To be released |

Alternate Ligand Charge Models | To be released |

Aligned Protein Families | To be released |

DOCK Sample Inputs | RGD FAD FLX |

Flexibility Subset Lists | 7orless 8to15 15+ all |

## SB2010 Protein Families [2010.05.19 Initial Release]

Protein Family | Size |
---|---|

HIV RT | 21 |

Factor Xa | 41 |

Neuraminidase | 43 |

Sialidase | 11 |

Ribonuclease T1 | 7 |

OMP Decarboxylase | 7 |

Estrogen Receptor | 45 |

T4 Lysozyme | 13 |

Beta Trypsin | 29 |

Streptavidin | 8 |

Thrombin | 37 |

Tyrosine Phosphatase | 20 |

HMG COA Reductase | 20 |

Ribonuclease A | 14 |

Alpha Trypsin | 46 |

COX | 7 |

Acetylcholinesterase | 19 |

HIV Protease | 60 |

Thermolysin | 26 |

Carboxypeptidase A | 8 |

Matrix Metalloprotease | 14 |

Egg Lysozyme | 14 |

Phospholipase A2 | 15 |

Thymidylate Synthase | 12 |

Carbonic Anhydrase | 29 |