Difference between revisions of "Rizzo Lab Information and Tutorials"

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== DOCKing ==
== DOCKing ==
*[[DOCK Tutorials]]
{| cellpadding=0 width=90%
*[[Testset Protocols]]
|[[DOCK Tutorials]]
*[[Scoring Functions]]
|[[Testset Protocols]]
*[[Sampling Methods]]
|[[Scoring Functions]]
*[[ZINC Database]]
|[[Sampling Methods]]
|[[ZINC Database]]
|[[Installing DOCK]]
== Molecular Dynamics ==
== Molecular Dynamics ==

Revision as of 21:27, 14 October 2009

Visualization Software

Basic Linux Tools

Unix vi sed - Stream Editor in Unix
Stupid awk tricks Ways to remove the first line PBS Queue
gdb (GNU Debugger) Common Errors - ctrl M C Shell Scripting
Unix find Which Unix Distribution?


DOCK Tutorials Testset Protocols Scoring Functions Sampling Methods
ZINC Database Installing DOCK

Molecular Dynamics

AMBER Tutorials AMBER tricks
NAMD tutorial NAMD Amber inputs

NAMD and DOCK on BlueGene

Monte Carlo

Analysis Tools



Get time estimate for free blocks Get Job ids to use for llcancel Get time for job completion
Submitting BlueGene Jobs Compiling Applications for BG/L Compiling Applications for BG/P

Conversion between file types


X-Win32 CVS Commands Ethernet Cables
Getting a BNL Account Getting a Seawulf Account Sequence alignment
Visiting BNL Making images for publication Lab-designed code and programs
scp files from cluster to NYBlue Setup ssh tunnel to NYBlue fen Server Administration
Code Development NAMD on Seawulf Dell 5110cn Printer


Research Foundation