Difference between revisions of "Rizzo Lab Information and Tutorials"

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*[[Testset Protocols]]
 
*[[Testset Protocols]]
 
*[[Parameter List/Explanations]]
 
*[[Parameter List/Explanations]]
 +
*[[Scoring Functions]]
 
*[[Example Input Files]]
 
*[[Example Input Files]]
 +
*[[DOCK Abbreviations Guide]]
 
*[[Advanced Dock Utilities/Information]]
 
*[[Advanced Dock Utilities/Information]]
 +
*[[DOCK6 POSE Reproduction]]
 
|}
 
|}
  
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== Analysis Tools ==
 
== Analysis Tools ==
 +
* [[Analysis Tools Repository]]
 
* [[MATLAB]]
 
* [[MATLAB]]
 
* [[Octave]]
 
* [[Octave]]
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*[[Rotation students Wiki]]
 
*[[Rotation students Wiki]]
 
|}
 
|}
 +
 +
== AutoDock4 ==
 +
{|
 +
*[[AutoDock4 Pose Reproduction Tutorial]]
 +
*[[AutoDock4 Crossdock]]
 +
*[[AutoDock4 Benchmark Results]]
 +
|}
 +
 +
== AutoDock Vina ==
 +
{|
 +
*[[AutoDock Vina Pose Reproduction Tutorial]]
 +
*[[AutoDock Vina Benchmark Results]]
 +
|}
  
 
== Miscellaneous ==
 
== Miscellaneous ==
 
{| cellpadding=0 width=90%
 
{| cellpadding=0 width=90%
*[[X-Win32]]  
+
* [[How to write Makefiles]]
 +
* [[X-Win32]]  
 
* [[CVS Commands]]
 
* [[CVS Commands]]
 
* [[Ethernet Cables]]
 
* [[Ethernet Cables]]

Latest revision as of 10:27, 15 September 2020

DOCK

Visualization Software

Basic Linux Tools

Molecular Dynamics

GROMACS

Monte Carlo

Analysis Tools

Databases

Conversion between file types

Setting up accounts

AutoDock4

AutoDock Vina

Miscellaneous

Archive