Difference between revisions of "Rizzo Lab Information and Tutorials"

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| [[X-Win32]]  
| [[X-Win32]]  
| [[CVS Commands]]
| [[CVS Commands]]
| [[BNL Cluster]]
| [[Ethernet Cables]]
| [[Getting a BNL Account]]  
| [[Getting a BNL Account]]  

Revision as of 11:59, 8 June 2009

Visualization Software

Basic Linux Tools

Unix vi sed - Stream Editor in Unix
Stupid awk tricks Ways to remove the first line PBS Queue
gdb (GNU Debugger) Common Errors - ctrl M C Shell Scripting


Molecular Dynamics

AMBER Tutorials AMBER tricks
NAMD tutorial ptraj

NAMD and DOCK on BlueGene

Monte Carlo

Analysis Tools



Get time estimate for free blocks Get Job ids to use for llcancel Get time for job completion
Submitting BlueGene Jobs Compiling Applications for BG/L Compiling Applications for BG/P

Conversion between file types


X-Win32 CVS Commands Ethernet Cables
Getting a BNL Account Getting a Seawulf Account Sequence alignment
Visiting BNL Making images for publication Lab-designed code and programs
scp files from cluster to NYBlue Setup ssh tunnel to NYBlue fen Server Administration
Code Development NAMD on Seawulf Dell 5110cn Printer


Research Foundation