Difference between revisions of "Rizzo Lab Members and Contact Information"

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(FORMER MEMBERS)
 
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{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
|- style="background:white"
 
|- style="background:white"
! style="width:30%" |Robert C. Rizzo
+
! style="width:45%" |Robert C. Rizzo
  
 
Stony Brook University  
 
Stony Brook University  
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Department of Applied Mathematics and Statistics
 
Department of Applied Mathematics and Statistics
  
Office: Math Tower 1-101
+
Office: Math Tower 1-111
 
   
 
   
 
Lab:    Math Tower 3-129
 
Lab:    Math Tower 3-129
Line 14: Line 14:
 
Stony Brook, NY 11794-3600
 
Stony Brook, NY 11794-3600
  
! style="width:30%" |Email:  rizzorc@gmail.com
+
! style="width:45%" |Email:  rizzorc [at] gmail [dot] com
  
 
Office: (631) 632-9340
 
Office: (631) 632-9340
Line 22: Line 22:
 
Fax:    (631) 632-8490
 
Fax:    (631) 632-8490
  
Website: rizzo.ams.sunysb.edu
+
Website: rizzolab.org
  
 
Wiki: ringo.ams.sunysb.edu
 
Wiki: ringo.ams.sunysb.edu
  
! style="width:30%" |Rob cell: 631 944 2891
+
|}
 
 
Trent home: 631 751 2864
 
 
 
Trent cell: 516 381 0926
 
 
 
Rashi cell: 718 685 9401
 
 
 
Brian cell: 410 991 7188
 
 
 
Sudipto cell: 631 220 5744
 
 
 
Yulin cell: 631 374 1302
 
 
 
Patrick home: 631 828 1637
 
 
 
Patrick cell: 203 273 6149
 
  
|-
+
[[Image: Rizzo_lab_2019.png|thumb|center|4000px|'''Current 2019 Rizzo Lab Members:''' ''from left to right'' Stephen, Guilherme, Rodger, Rob, Chris, Hyper Master of DOCK John, Scott, and Lauren]]
|}
 
  
 
== CURRENT MEMBERS ==
 
== CURRENT MEMBERS ==
Line 57: Line 40:
 
|-
 
|-
 
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo]
 
|[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/people/rizzo.html Dr. Robert C. Rizzo]
||[[Image:Rob.email.png]]
+
||rizzorc [at] gmail [dot] com
||PI
+
||Principal investigator
||group leader
+
||Group leader
 
||2004 - present
 
||2004 - present
 
|-
 
|-
|[http://www.ams.sunysb.edu/~tbalius/ Trent E. Balius]
+
|[https://www.gduarter.com Guilherme Duarte Ramos Matos]
||[[Image:Trent.email.png]]
+
||Guilherme.duarteramosmatos [at] stonybrook [dot] edu
||graduate student
+
||Postdoctoral Researcher
||EGFR, HIVgp41
+
||DOCK6 development
||2007 - present
+
||2019 - present
 
|-
 
|-
|[http://www.sinc.sunysb.edu/Stu/ragoyal/ Rashi Goyal]
+
|[http://ringo.ams.sunysb.edu/~lprentis/ Lauren Prentis]
||[[Image:Rashi.email.png]]
+
||lauren.prentis [at] stonybrook [dot] edu
||graduate student
+
||Doctoral Student
||Influenza/ HIV  
+
||HIV gp41, Fatty acid binding protein, de novo design
||2007 - present
+
||2016 - present
 
|-
 
|-
|Yulin Huang
+
|Stephen Telehany
||[[Image:Yulin.email.png]]
+
||stephen.telehany [at] stonybrook [dot] edu
||graduate student
+
||Doctoral Student
||EGFR
+
||Zika Virus, de novo design
||2007 - present
+
||2017 - present
 +
|-
 +
|John Bickel
 +
||john.bickel [at] stonybrook [dot] edu
 +
||Doctoral Student
 +
||de novo design
 +
||2019 - present
 
|-
 
|-
|Brian McGillick
+
||Christopher Corbo
||[[Image:Brian.email.png]]
+
||christopher.corbo [at] stonybrook [dot] edu
||graduate student
+
||Masters Student
||HIVgp41
+
||Test Set benchmarking, xlogp
||2007 - present
+
||2019 - present
 
|-
 
|-
|[http://rizzo.ams.sunysb.edu/~sudipto/ Sudipto Mukherjee]
+
||Rodger Tan
||[[Image:Sudipto.email.png]]
+
||rodger.tan [at] stonybrook [dot] edu
||graduate student
+
||Undergraduate Student
||DOCK development, HIVgp41
+
||Test Set, benchmarking, de novo design
||2005 - present
+
||2019 - present
 
|-
 
|-
|Patrick Holden
+
|Scott Laverty
||patrick.m.holden@gmail.com
+
|scott.laverty [at] stonybrook [dot] edu
||Research Aide
+
|Undergraduate Student
||HIVgp41
+
|DOCK6 benchmarking with Autodock4
||Summer 2009 - present
+
|2019 - present
 
|}
 
|}
  
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{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
|- style="background:lightgreen"
 
|- style="background:lightgreen"
! style="width 40%" !|Name
+
! style="width 20%" !|Name
! style="width:30%" !|Status
+
! style="width:20%" !|Status
! style="width:20%" !|Year
+
! style="width:20%" !|Project
 +
! style="width:10%" !|Year
 +
! style="width:20%" !|New Position
 
|-
 
|-
|Dimir Abrar
+
|Yuchen Zhou
||undergraduate student
+
||Doctoral / Masters student
||2008-2009
+
||BoNT/E, DOCK scoring functions, FABP5
 +
||2012 - 2018
 +
|| Postdoc, [http://filizolalab.org/ Filizola Lab] at [https://icahn.mssm.edu/ ISMMS]
 
|-
 
|-
|Chetan Raj Rupakheti
+
|Jiaye Guo
||summer student
+
||Doctoral student
||2008
+
||Solvated footprints, Small-molecule inhibitor for HER2
 +
||2013 - 2018
 +
|| Postdoc, [http://www.choderalab.org/ Chodera Lab] at [https://www.mskcc.org/ MSKCC]
 +
|-
 +
|Courtney Singleton
 +
||MD / PhD Student
 +
||HIVgp41, De novo design, genetic algorithm
 +
||2014 - 2018
 +
||Stony Brook Medical School
 +
|-
 +
|Dwight McGee
 +
||Postdoctoral Researcher
 +
||HIVgp41, Free energy calculations, de novo design
 +
||2015 - 2018
 +
|| [http://www.silicontx.com/ Silicon Therapeutics]
 +
|-
 +
|Brian Fochtman
 +
||Doctoral student
 +
||HIVgp41, DOCK development
 +
||2011 - 2017
 +
||The FDA
 
|-
 
|-
|Bently Strockbine
+
|Lingling Jiang
||postdoctoral 
+
||jianglilian68 [at] gmail [dot] com
||2005 - 2007
+
||HIVgp41, Pharmacophore modeling
 +
||2010 - 2015
 +
||Novo Nordisk
 
|-
 
|-
|Noel Carrascal
+
|Brian Ralph
||graduate student
+
||Undergraduate student
||2005 - 2007
+
||Fatty acid binding protein, De novo design
 +
||2013 - 2015
 +
||Dental school
 
|-
 
|-
|Ricky Chachra
+
|William J. Allen
||undergraduate student
+
||Postdoctoral fellow
||2005 - 2007
+
||HIVgp41, DOCK development
 +
||2011 - 2015
 +
||[http://www.tacc.utexas.edu/ TACC]
 
|-
 
|-
|Amee Pate
+
|Yulin Huang
||undergraduate student
+
||Doctoral student
||2005 - 2007
+
||EGFR, IGF-IR
 +
||2008 - 2013
 +
||Wall Street
 
|-
 
|-
|-
+
|Sudipto Mukherjee
|Kenneth Ascher
+
||Doctoral / Masters student
|undergraduate student
+
||DOCK development, HIVgp41
|2009 - 2010
+
||2005 - 2012
 
+
||Postdoc, [http://www.voelzlab.org/ Voelz Lab]
|}
 
 
 
== ROTATION STUDENTS ==
 
{| border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:90%"
 
|- style="background:orange"
 
! style="width:40%" !|Name
 
! style="width:50%" !|Program
 
 
|-
 
|-
||Alvin Acerbo||Biochemistry and Struct. Biology
+
|[http://docking.org/~tbalius/ Trent E. Balius]
 +
||Doctoral student
 +
||EGFR, HIVgp41, DOCK development
 +
||2007 - 2012
 +
||Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the [https://frederick.cancer.gov/ Frederick National Lab for Cancer Research]
 
|-
 
|-
||Jeremy Adler||Medical Scientist MD/PhD
+
|Patrick Holden
|-  
+
||patrick.m.holden [at] gmail [dot] com
||Ronald Chiu||Biology
+
||HIVgp41
 +
||2009 - 2011
 +
|| --
 
|-
 
|-
||Roberto Colson||Applied Math & Stat
+
| Jibril Ashiru-Balogun
 +
||Undergraduate student
 +
||HIVgp41
 +
||2010 - 2011
 +
|| --
 
|-
 
|-
||Ji Han||Applied Math & Stat
+
| Brian Shea
 +
||Undergraduate student
 +
||Kinases
 +
||2010
 +
|| --
 
|-
 
|-
||Zhuying Huang||Applied Math & Stat
+
| Patrick Murphy
 +
||Undergraduate student
 +
||Influenza
 +
||2009 - 2010
 +
|| --
 
|-
 
|-
||Dongyung Kim||Applied Math & Stat
+
| Rashi Goyal
 +
||Masters student
 +
||Influenza, HIV
 +
||2007 - 2010
 +
|| --
 
|-
 
|-
||Noha Lim||Applied Math & Stat
+
| Brian McGillick
 +
||Masters student
 +
||HIVgp41
 +
||2007 - 2010
 +
|| --
 
|-
 
|-
||Christopher N. J. Marai||Biochem. and Struct. Bio.
+
| Kenneth Ascher
 +
||Undergraduate student
 +
||DOCK method development
 +
||2009 - 2010
 +
|| --
 
|-
 
|-
||Vadim Patsalo||Applied Math & Stat
+
| Dimir Abrar
 +
||Undergraduate student
 +
||HIVRT crossdocking
 +
||2008 - 2009
 +
|| --
 
|-
 
|-
||Shou-Chiang Peng||Applied Math & Stat
+
| Chetan Raj Rupakheti
 +
||Summer student
 +
||HIVgp41
 +
||2008
 +
|| --
 
|-
 
|-
||Jerry Shipman||Biomedical Engineering
+
| Bentley Strockbine
 +
||Postdoc 
 +
||HIVgp41
 +
||2005 - 2007
 +
|| --
 
|-
 
|-
||Jie Wu||Applied Math & Stat
+
| Noel Carrascal
 +
||Doctoral student
 +
||DOCK method development
 +
||2005 - 2007
 +
|| --
 
|-
 
|-
||Navamita Ray||Applied Math & Stat
+
| Ricky Chachra
 +
||Undergraduate student
 +
||Influenza drug resistance
 +
||2005 - 2007
 +
|| --
 
|-
 
|-
||Eric||Applied Math & Stat
+
| Amee Patel
 +
||Undergraduate student
 +
||Testset development
 +
||2005 - 2007
 +
|| --
 
|-
 
|-
 +
|-
 
|}
 
|}

Latest revision as of 18:40, 19 November 2019

CONTACT

Robert C. Rizzo

Stony Brook University

Department of Applied Mathematics and Statistics

Office: Math Tower 1-111

Lab: Math Tower 3-129

Stony Brook, NY 11794-3600

Email: rizzorc [at] gmail [dot] com

Office: (631) 632-9340

Lab: (631) 632-8519

Fax: (631) 632-8490

Website: rizzolab.org

Wiki: ringo.ams.sunysb.edu

Current 2019 Rizzo Lab Members: from left to right Stephen, Guilherme, Rodger, Rob, Chris, Hyper Master of DOCK John, Scott, and Lauren

CURRENT MEMBERS

Name E-mail Status Project Year
Dr. Robert C. Rizzo rizzorc [at] gmail [dot] com Principal investigator Group leader 2004 - present
Guilherme Duarte Ramos Matos Guilherme.duarteramosmatos [at] stonybrook [dot] edu Postdoctoral Researcher DOCK6 development 2019 - present
Lauren Prentis lauren.prentis [at] stonybrook [dot] edu Doctoral Student HIV gp41, Fatty acid binding protein, de novo design 2016 - present
Stephen Telehany stephen.telehany [at] stonybrook [dot] edu Doctoral Student Zika Virus, de novo design 2017 - present
John Bickel john.bickel [at] stonybrook [dot] edu Doctoral Student de novo design 2019 - present
Christopher Corbo christopher.corbo [at] stonybrook [dot] edu Masters Student Test Set benchmarking, xlogp 2019 - present
Rodger Tan rodger.tan [at] stonybrook [dot] edu Undergraduate Student Test Set, benchmarking, de novo design 2019 - present
Scott Laverty scott.laverty [at] stonybrook [dot] edu Undergraduate Student DOCK6 benchmarking with Autodock4 2019 - present

FORMER MEMBERS

Name Status Project Year New Position
Yuchen Zhou Doctoral / Masters student BoNT/E, DOCK scoring functions, FABP5 2012 - 2018 Postdoc, Filizola Lab at ISMMS
Jiaye Guo Doctoral student Solvated footprints, Small-molecule inhibitor for HER2 2013 - 2018 Postdoc, Chodera Lab at MSKCC
Courtney Singleton MD / PhD Student HIVgp41, De novo design, genetic algorithm 2014 - 2018 Stony Brook Medical School
Dwight McGee Postdoctoral Researcher HIVgp41, Free energy calculations, de novo design 2015 - 2018 Silicon Therapeutics
Brian Fochtman Doctoral student HIVgp41, DOCK development 2011 - 2017 The FDA
Lingling Jiang jianglilian68 [at] gmail [dot] com HIVgp41, Pharmacophore modeling 2010 - 2015 Novo Nordisk
Brian Ralph Undergraduate student Fatty acid binding protein, De novo design 2013 - 2015 Dental school
William J. Allen Postdoctoral fellow HIVgp41, DOCK development 2011 - 2015 TACC
Yulin Huang Doctoral student EGFR, IGF-IR 2008 - 2013 Wall Street
Sudipto Mukherjee Doctoral / Masters student DOCK development, HIVgp41 2005 - 2012 Postdoc, Voelz Lab
Trent E. Balius Doctoral student EGFR, HIVgp41, DOCK development 2007 - 2012 Project Lead, RAS Computational Chemistry Team in the Cancer Research Tecnhology Program (CRTP) at the Frederick National Lab for Cancer Research
Patrick Holden patrick.m.holden [at] gmail [dot] com HIVgp41 2009 - 2011 --
Jibril Ashiru-Balogun Undergraduate student HIVgp41 2010 - 2011 --
Brian Shea Undergraduate student Kinases 2010 --
Patrick Murphy Undergraduate student Influenza 2009 - 2010 --
Rashi Goyal Masters student Influenza, HIV 2007 - 2010 --
Brian McGillick Masters student HIVgp41 2007 - 2010 --
Kenneth Ascher Undergraduate student DOCK method development 2009 - 2010 --
Dimir Abrar Undergraduate student HIVRT crossdocking 2008 - 2009 --
Chetan Raj Rupakheti Summer student HIVgp41 2008 --
Bentley Strockbine Postdoc HIVgp41 2005 - 2007 --
Noel Carrascal Doctoral student DOCK method development 2005 - 2007 --
Ricky Chachra Undergraduate student Influenza drug resistance 2005 - 2007 --
Amee Patel Undergraduate student Testset development 2005 - 2007 --