User contributions
- 15:04, 23 October 2018 (diff | hist) . . (+114) . . Rizzo Lab Members and Contact Information (→FORMER MEMBERS)
- 11:56, 24 January 2018 (diff | hist) . . (+3) . . AMS-532 Journal Club in Computational Biology (→Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage)
- 11:55, 24 January 2018 (diff | hist) . . (+3) . . 2017-2018 AMS-532 Fall-Spring (→Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage)
- 10:01, 5 May 2017 (diff | hist) . . (+20) . . DOCK Denovo
- 11:35, 28 April 2017 (diff | hist) . . (+4) . . SB2012 (→DOCK Input Files)
- 11:34, 28 April 2017 (diff | hist) . . (-1) . . RGD (top)
- 11:33, 28 April 2017 (diff | hist) . . (+1) . . RGD
- 11:33, 28 April 2017 (diff | hist) . . (+4,424) . . N RGD (Created page with "conformer_search_type flex user_specified_anchor no limit_max_anchors ...")
- 11:33, 28 April 2017 (diff | hist) . . (-4) . . SB2012 (→DOCK Input Files)
- 15:54, 3 April 2017 (diff | hist) . . (+16) . . 2017 AMBER tutorial with 4qmz
- 15:53, 3 April 2017 (diff | hist) . . (+38) . . 2017 AMBER tutorial with 4qmz
- 15:50, 3 April 2017 (diff | hist) . . (+98) . . 2017 AMBER tutorial with 4qmz (→Introduction)
- 16:17, 22 March 2017 (diff | hist) . . (-28) . . Rizzo Lab Information and Tutorials (→Docking)
- 16:15, 22 March 2017 (diff | hist) . . (-21) . . Rizzo Lab Information and Tutorials (→Docking)
- 16:13, 22 March 2017 (diff | hist) . . (+41,623) . . N 2017 Denovo design tutorial 1 with PDB 1BJU (Created page with "==2017 Denovo design tutorial 1 with PDB 1BJU== The Denovo module of DOCK is a relatively new feature (as of Fall 2016) that constructs new ligand molecules inside a protein ...")
- 16:12, 22 March 2017 (diff | hist) . . (+10,269) . . N 2017 Denovo refine tutorial with PDB 1BJU (Created page with "==2017 Denovo refine tutorial with PDB 1BJU== The Denovo Refinement module of DOCK constructs new ligand molecules by adding side chains to any atom of a reference molecule. ...")
- 16:12, 22 March 2017 (diff | hist) . . (+47) . . DOCK Denovo
- 16:11, 22 March 2017 (diff | hist) . . (+10,273) . . N 2017 Denovo refinement tutorial with PDB 1BJU (Created page with "==2017 Denovo refinement tutorial with PDB 1BJU== The Denovo Refinement module of DOCK constructs new ligand molecules by adding side chains to any atom of a reference molecu...")
- 16:11, 22 March 2017 (diff | hist) . . (+51) . . DOCK Denovo
- 16:09, 22 March 2017 (diff | hist) . . (+41,621) . . N 2017 Denovo design tutorial with PDB 1BJU (Created page with "==2017 Denovo design tutorial with PDB 1BJU== The Denovo module of DOCK is a relatively new feature (as of Fall 2016) that constructs new ligand molecules inside a protein ac...") (top)
- 16:08, 22 March 2017 (diff | hist) . . (+7) . . DOCK Denovo
- 16:08, 22 March 2017 (diff | hist) . . (+39) . . N DOCK Denovo (Created page with "*2017 Denovo tutorial with PDB 1BJU")
- 16:06, 22 March 2017 (diff | hist) . . (+17) . . Rizzo Lab Information and Tutorials (→Docking)
- 16:42, 8 March 2017 (diff | hist) . . (+4) . . Seawulf Items Needed
- 16:42, 8 March 2017 (diff | hist) . . (+227) . . Seawulf Items Needed
- 16:39, 8 March 2017 (diff | hist) . . (+9) . . Seawulf Items Needed
- 16:02, 6 February 2017 (diff | hist) . . (-47) . . DOCK Tutorials
- 16:01, 6 February 2017 (diff | hist) . . (0) . . DOCK Tutorials
- 16:01, 6 February 2017 (diff | hist) . . (0) . . DOCK Tutorials
- 16:00, 6 February 2017 (diff | hist) . . (+46) . . DOCK Tutorials
- 11:52, 2 February 2017 (diff | hist) . . (-50) . . DOCK Tutorials
- 11:51, 2 February 2017 (diff | hist) . . (+1) . . DOCK Tutorials
- 11:50, 2 February 2017 (diff | hist) . . (-1) . . DOCK Tutorials
- 17:15, 1 February 2017 (diff | hist) . . (-37) . . AMBER Tutorials
- 17:15, 1 February 2017 (diff | hist) . . (+37) . . AMBER Tutorials
- 16:53, 30 January 2017 (diff | hist) . . (+1) . . 2016 DOCK tutorial with Beta Trypsin (→Grid computing) (top)
- 16:53, 30 January 2017 (diff | hist) . . (0) . . 2016 DOCK tutorial with Beta Trypsin (→Box Generation)
- 14:13, 17 January 2017 (diff | hist) . . (+9,049) . . N DOCK Denovo Refinement (Created page with "==Dock Denovo Refinement== The Denovo Refinement module of DOCK constructs new ligand molecules by adding side chains to any atom of a reference molecule. The side chains are...")
- 13:17, 17 January 2017 (diff | hist) . . (+28) . . Rizzo Lab Information and Tutorials (→Docking)
- 12:38, 15 April 2016 (diff | hist) . . (+3) . . SB2012 (→DOCK Input Files)
- 12:38, 15 April 2016 (diff | hist) . . (+403) . . SB2012 (→DOCK Input Files)
- 12:37, 15 April 2016 (diff | hist) . . (+13) . . SB2012 (→DOCK Input Files)
- 13:32, 6 April 2016 (diff | hist) . . (+614) . . N 2016 AMBER tutorial with Beta Trypsin (Created page with " For additional Rizzo Lab tutorials see AMBER Tutorials. In this tutorial, we will learn how to run a molecular dynamics simulation of a protein-ligand complex. We will ...")
- 13:32, 6 April 2016 (diff | hist) . . (+4) . . AMBER Tutorials
- 13:30, 6 April 2016 (diff | hist) . . (-4) . . AMBER Tutorials
- 13:30, 6 April 2016 (diff | hist) . . (+4) . . AMBER Tutorials
- 13:29, 6 April 2016 (diff | hist) . . (+4) . . DOCK Tutorials
- 13:16, 6 April 2016 (diff | hist) . . (+7) . . 2016 AMBER tutorial with Thrombin (→MM-GBSA Energy Calculation) (top)
- 13:16, 6 April 2016 (diff | hist) . . (0) . . 2016 AMBER tutorial with Thrombin (→PMEMD)
- 13:16, 6 April 2016 (diff | hist) . . (+16) . . 2016 AMBER tutorial with Thrombin (→Ptraj)
- 13:15, 6 April 2016 (diff | hist) . . (+16) . . 2016 AMBER tutorial with Thrombin (→PMEMD)
- 13:15, 6 April 2016 (diff | hist) . . (+13) . . 2016 AMBER tutorial with Thrombin (→Antechamber, Parmchk, tLeap)
- 13:14, 6 April 2016 (diff | hist) . . (+8) . . 2016 AMBER tutorial with Thrombin (→I. Introduction)
- 13:14, 6 April 2016 (diff | hist) . . (-5,292) . . 2016 AMBER tutorial with Thrombin (→MM-GBSA Energy Calculation)
- 13:13, 6 April 2016 (diff | hist) . . (-4,621) . . 2016 AMBER tutorial with Thrombin (→Ptraj)
- 13:13, 6 April 2016 (diff | hist) . . (-3) . . 2016 AMBER tutorial with Thrombin (→PMEMD)
- 13:13, 6 April 2016 (diff | hist) . . (-6,188) . . 2016 AMBER tutorial with Thrombin (→III. Simulation using pmemd)
- 13:12, 6 April 2016 (diff | hist) . . (-3,973) . . 2016 AMBER tutorial with Thrombin (→Antechamber, Parmchk, tLeap)
- 13:12, 6 April 2016 (diff | hist) . . (-536) . . 2016 AMBER tutorial with Thrombin (→I. Introduction)
- 13:11, 6 April 2016 (diff | hist) . . (-538) . . 2016 AMBER tutorial with Thrombin (→PARP)
- 13:11, 6 April 2016 (diff | hist) . . (-3,651) . . 2016 AMBER tutorial with Thrombin (→AMBER)
- 13:11, 6 April 2016 (diff | hist) . . (+25,356) . . N 2016 AMBER tutorial with Thrombin (Created page with " For additional Rizzo Lab tutorials see AMBER Tutorials. In this tutorial, we will learn how to run a molecular dynamics simulation of a protein-ligand complex. We will ...")
- 13:10, 6 April 2016 (diff | hist) . . (+40) . . AMBER Tutorials
- 13:36, 4 April 2016 (diff | hist) . . (-2) . . 2016 DOCK tutorial with Beta Trypsin (→Selecting Spheres)
- 13:35, 4 April 2016 (diff | hist) . . (-1) . . 2016 DOCK tutorial with Beta Trypsin (→Box Generation)
- 10:20, 30 March 2016 (diff | hist) . . (0) . . 2016 DOCK tutorial with Beta Trypsin
- 15:01, 21 March 2016 (diff | hist) . . (+9) . . 2016 DOCK tutorial with Beta Trypsin (→VIII. Frequently Encountered Problems)
- 14:57, 25 January 2016 (diff | hist) . . (+4) . . 2016 AMS-536 Spring (→Schedule)
- 14:36, 25 January 2016 (diff | hist) . . (+32) . . 2016 AMS-536 Spring
- 02:15, 12 November 2015 (diff | hist) . . (-5) . . DOCK Benchmarking (top)
- 02:13, 12 November 2015 (diff | hist) . . (-1,000) . . DOCK Benchmarking
- 01:54, 12 November 2015 (diff | hist) . . (0) . . DOCK Benchmarking
- 01:52, 12 November 2015 (diff | hist) . . (+2,423) . . DOCK Benchmarking
- 13:53, 4 November 2015 (diff | hist) . . (+186) . . DOCK Benchmarking
- 13:39, 3 November 2015 (diff | hist) . . (-10) . . Rizzo Lab Information and Tutorials (→Docking)
- 10:45, 3 November 2015 (diff | hist) . . (+10) . . Rizzo Lab Information and Tutorials (→Docking)
- 13:41, 2 November 2015 (diff | hist) . . (+4,321) . . DOCK Benchmarking
- 13:26, 2 November 2015 (diff | hist) . . (+37) . . DOCK Benchmarking
- 13:19, 2 November 2015 (diff | hist) . . (+496) . . N DOCK Benchmarking (Created page with "{| align="center" border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:95%" |- style="background:cornflowerblue" | <center>'''Date, Autho...")
- 12:53, 2 November 2015 (diff | hist) . . (+23) . . Rizzo Lab Information and Tutorials (→Docking)
- 23:38, 30 November 2014 (diff | hist) . . (-581) . . 2014 AMS-535 Fall
- 16:50, 10 September 2014 (diff | hist) . . (+19) . . 2014 AMS-535 Fall
- 09:55, 9 September 2014 (diff | hist) . . (-9) . . 2014 AMS-535 Fall
- 14:51, 4 September 2014 (diff | hist) . . (+162) . . 2014 AMS-535 Fall
- 13:55, 4 September 2014 (diff | hist) . . (+23) . . 2014 AMS-535 Fall
- 13:54, 4 September 2014 (diff | hist) . . (+1) . . 2014 AMS-535 Fall
- 13:38, 27 August 2014 (diff | hist) . . (0) . . 2014 AMS-535 Fall
- 10:16, 27 August 2014 (diff | hist) . . (-2) . . AMS-536 Molecular Modeling of Biological Molecules
- 10:07, 27 August 2014 (diff | hist) . . (+40) . . AMS-535 Introduction to Computational Structural Biology and Drug Design
- 10:01, 27 August 2014 (diff | hist) . . (+1) . . AMS-532 Journal Club in Computational Biology
- 11:34, 18 August 2014 (diff | hist) . . (+9) . . AMS-535 Introduction to Computational Structural Biology and Drug Design
- 11:32, 18 August 2014 (diff | hist) . . (-31) . . AMS-535 Introduction to Computational Structural Biology and Drug Design
- 11:28, 18 August 2014 (diff | hist) . . (0) . . 2014 AMS-535 Fall
- 15:22, 12 August 2014 (diff | hist) . . (-469) . . 2014 AMS-535 Fall
- 15:21, 12 August 2014 (diff | hist) . . (-3,472) . . 2014 AMS-535 Fall
- 15:13, 12 August 2014 (diff | hist) . . (0) . . 2014 AMS-535 Fall
- 15:06, 12 August 2014 (diff | hist) . . (+25,040) . . N 2014 AMS-535 Fall (Created page with "{| align="center" border="1" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:95%" |- style="background:cornflowerblue" | <center>'''Date'''</ce...")
- 15:05, 12 August 2014 (diff | hist) . . (+23) . . AMS-535 Introduction to Computational Structural Biology and Drug Design
- 14:18, 26 March 2014 (diff | hist) . . (+12) . . 2014 DOCK tutorial with HIV Protease (→VIII. Frequently Encountered Problems)
- 14:18, 26 March 2014 (diff | hist) . . (+9) . . 2014 DOCK tutorial with HIV Protease (→VIII. Frequently Encountered Problems)
- 14:14, 26 March 2014 (diff | hist) . . (-10) . . 2014 DOCK tutorial with HIV Protease
- 14:13, 26 March 2014 (diff | hist) . . (-66) . . 2014 DOCK tutorial with HIV Protease (→VIII. Frequently Encountered Problems)
- 14:05, 26 March 2014 (diff | hist) . . (+137) . . 2014 AMBER tutorial with HIV Protease
- 13:58, 26 March 2014 (diff | hist) . . (-1) . . 2014 AMBER tutorial with HIV Protease (→Plotting Energy)
- 13:58, 26 March 2014 (diff | hist) . . (0) . . N File:MMGBSA.png (top)
- 13:53, 26 March 2014 (diff | hist) . . (+109) . . 2014 AMBER tutorial with HIV Protease (→MM-GBSA Energy Calculation)
- 13:42, 26 March 2014 (diff | hist) . . (+26) . . 2014 AMBER tutorial with HIV Protease (→IV. Simulation Analysis)
- 13:42, 26 March 2014 (diff | hist) . . (+22) . . 2014 AMBER tutorial with HIV Protease (→III. Simulation using sander)
- 13:41, 26 March 2014 (diff | hist) . . (+13) . . 2014 AMBER tutorial with HIV Protease (→II. Structural Preparation)
- 13:41, 26 March 2014 (diff | hist) . . (+14) . . 2014 AMBER tutorial with HIV Protease (→I. Introduction)
- 13:38, 26 March 2014 (diff | hist) . . (-9) . . 2014 AMBER tutorial with HIV Protease (→Downloading the PDB file (1LOQ))
- 13:36, 26 March 2014 (diff | hist) . . (-29,351) . . 2014 AMBER tutorial with HIV Protease
- 13:32, 26 March 2014 (diff | hist) . . (+36,907) . . N 2014 AMBER tutorial with HIV Protease (Created page with "For additional Rizzo Lab tutorials see AMBER Tutorials. In this tutorial, we will learn how to run a molecular dynamics simulation of a protein-ligand complex. We will t...")
- 13:31, 26 March 2014 (diff | hist) . . (+44) . . AMBER Tutorials
- 10:32, 26 March 2014 (diff | hist) . . (0) . . 2013 AMBER Tutorial with UMP and OMP (→Plotting Energy)
- 10:31, 26 March 2014 (diff | hist) . . (0) . . 2012 AMBER Tutorial with Biotin and Streptavidin (→Plotting your results) (top)
- 13:34, 15 April 2013 (diff | hist) . . (-1) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 13:34, 15 April 2013 (diff | hist) . . (-2) . . 2013 AMS-536 Spring (→Schedule)
- 12:40, 18 March 2013 (diff | hist) . . (+440) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 14:36, 6 March 2013 (diff | hist) . . (+172) . . 2013 AMS-536 Spring (→Schedule)
- 14:31, 6 March 2013 (diff | hist) . . (-49) . . 2013 AMS-536 Spring (→Schedule)
- 15:17, 25 February 2013 (diff | hist) . . (-2) . . 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase (→II. Preparing the Receptor and Ligand)
- 14:51, 25 February 2013 (diff | hist) . . (+10) . . 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase (→V. Docking a Single Molecule for Pose Reproduction)
- 14:48, 25 February 2013 (diff | hist) . . (+74) . . 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase
- 14:03, 30 January 2013 (diff | hist) . . (+352) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 11:36, 30 January 2013 (diff | hist) . . (+144) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 11:28, 30 January 2013 (diff | hist) . . (+41) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 15:05, 28 January 2013 (diff | hist) . . (-3) . . 2013 AMS-536 Spring (→Schedule)
- 12:40, 28 January 2013 (diff | hist) . . (-7,617) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 12:33, 28 January 2013 (diff | hist) . . (+1,426) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 12:32, 28 January 2013 (diff | hist) . . (+7,064) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 12:24, 28 January 2013 (diff | hist) . . (0) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 15:09, 23 January 2013 (diff | hist) . . (+1,242) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 14:33, 22 January 2013 (diff | hist) . . (-3) . . 2013 AMS-536 Spring
- 11:21, 14 January 2013 (diff | hist) . . (-1,698) . . 2013 AMS-536 Spring
- 11:05, 14 January 2013 (diff | hist) . . (+7,543) . . N 2013 AMS-536 Spring (Created page with "<br> {| align="center" border="2" cellpadding="8" cellspacing="0" style="background:white; text-align:left; width:80%" |- style="background:white" ! style="width:10%" | '''Ins...")
- 11:05, 14 January 2013 (diff | hist) . . (+25) . . AMS-536 Molecular Modeling of Biological Molecules (→Course Schedules)
- 17:49, 5 December 2012 (diff | hist) . . (0) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 01:34, 12 November 2012 (diff | hist) . . (-1) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 11:51, 8 November 2012 (diff | hist) . . (0) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 14:50, 5 November 2012 (diff | hist) . . (0) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 10:39, 5 November 2012 (diff | hist) . . (-17) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 17:49, 4 November 2012 (diff | hist) . . (+1) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 17:48, 4 November 2012 (diff | hist) . . (+58) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 16:36, 15 October 2012 (diff | hist) . . (-5) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 09:14, 15 October 2012 (diff | hist) . . (+27) . . Rizzo Lab Members and Contact Information (→CONTACT)
- 00:05, 15 October 2012 (diff | hist) . . (+163) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 14:33, 1 October 2012 (diff | hist) . . (+266) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 12:08, 19 September 2012 (diff | hist) . . (+6) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 14:24, 17 September 2012 (diff | hist) . . (-15) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 15:50, 6 September 2012 (diff | hist) . . (+1) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 15:49, 6 September 2012 (diff | hist) . . (-91) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 11:58, 6 September 2012 (diff | hist) . . (+155) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 11:45, 6 September 2012 (diff | hist) . . (0) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 12:51, 31 August 2012 (diff | hist) . . (+205) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 09:49, 29 August 2012 (diff | hist) . . (-9,564) . . 2012-2013 AMS-532 Fall-Spring (→Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring))
- 09:42, 29 August 2012 (diff | hist) . . (+10,607) . . N 2012-2013 AMS-532 Fall-Spring (Created page with "== Journal Club Schedule (Fall & Spring) and Responsible Conduct of Research Schedule (Spring) == {| align="center" border="1" cellpadding="8" cellspacing="0" style="backgrou...")
- 09:41, 29 August 2012 (diff | hist) . . (+36) . . AMS-532 Laboratory Rotations and Journal Club in Computational Biology (→Course Schedules)
- 17:46, 28 August 2012 (diff | hist) . . (-151) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 17:14, 28 August 2012 (diff | hist) . . (0) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
- 17:14, 28 August 2012 (diff | hist) . . (0) . . 2012 AMS-535 Fall (→Course Participants, Topics, References, and Schedule)
