Dead-end pages
The following pages do not link to other pages in Rizzo_Lab.
Showing below up to 306 results in range #1 to #306.
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- 01mi.in
- 04md.in
- 2006-2007 AMS-532 Fall-Spring
- 2007-2008 AMS-532 Fall-Spring
- 2008-2009 AMS-532 Fall-Spring
- 2008-2009 LAB
- 2008 AMS-535 Fall
- 2008 AMS-536 Spring
- 2008 RCR GROUP MEETING
- 2008 Spring
- 2009-2010 AMS-532 Fall-Spring
- 2009-2010 GRD-500 Fall-Spring
- 2009 AMS-536 Spring
- 2009 RCR GROUP MEETING
- 2010-2011 AMS-532 Fall-Spring
- 2010-2011 GRD-500 Fall-Spring
- 2010 AMS-536 Spring
- 2010 GRD-500 Spring
- 2010 LAB
- 2010 RCR GROUP MEETING
- 2011-2012 AMS-532 Fall-Spring
- 2011-2012 GRD-500 Fall-Spring
- 2011 AMS-535 Fall
- 2011 AMS-536 Spring
- 2011 GRD-500 Spring
- 2011 RCR GROUP MEETING
- 2012-2013 AMS-532 Fall-Spring
- 2012 AMS-535 Fall
- 2012 GRD-500 Spring
- 2012 RCR GROUP MEETING
- 2013-2014 AMS-532 Fall-Spring
- 2013 RCR GROUP MEETING
- 2014-2015 AMS-532 Fall-Spring
- 2014 AMS-535 Fall
- 2014 RCR GROUP MEETING
- 2015-2016 AMS-532 Fall-Spring
- 2015 AMS-535 Fall
- 2015 RCR GROUP MEETING
- 2016-2017 AMS-532 Fall-Spring
- 2016 AMS-535 Fall
- 2016 RCR GROUP MEETING
- 2017-2018 AMS-532 Fall-Spring
- 2017 AMBER tutorial with 4qmz
- 2017 AMS-535 Fall
- 2017 Denovo design tutorial 1 with PDB 1BJU
- 2017 Denovo design tutorial 2 with PDB 4QMZ
- 2017 Denovo design tutorial with PDB 1BJU
- 2017 Denovo refinement tutorial with PDB 1BJU
- 2017 RCR GROUP MEETING
- 2018
- 2018-2019 AMS-532 Fall-Spring
- 2018 AMBER tutorial with 1c87
- 2018 AMBER tutorial with 2nnq
- 2018 AMS-535 Fall
- 2018 DOCK tutorial 1 with PDBID 2NNQ
- 2018 Denovo design tutorial 1 with PDB 2NNQ
- 2018 Denovo design tutorial 2 with PDB 1C87
- 2018 RCR GROUP MEETING
- 2019-2020 AMS-532 Fall-Spring
- 2019 AMBER tutorial with PDBID 2BXF
- 2019 AMS-535 Fall
- 2019 Covalent docking tutorial 1 with PDB 2VKG
- 2019 Covalent docking tutorial 1 with PDB 5VKG
- 2019 DOCK GA tutorial 1 with 2NNQ
- 2019 DOCK tutorial 1 with PDBID 2BXF
- 2019 DOCK tutorial 2 with PDBID 2P16
- 2019 DOCK tutorial 3 with PDBID 3JQZ
- 2019 Denovo design tutorial 1 with PDB 2BXF
- 2019 Denovo design tutorial 2 with PDB 2P16
- 2019 RCR GROUP MEETING
- 2020-2021 AMS-532 Fall-Spring
- 2020 AMBER tutorial with PDBID 3VJK
- 2020 AMS-535 Fall
- 2020 DOCK tutorial 1 with PDBID 3VJK
- 2020 DOCK tutorial 1 with PDBID XXXX
- 2020 DOCK tutorial 2 with PDBID 2GQG
- 2020 DOCK tutorial 2 with PDBID XXXX
- 2020 DOCK tutorial 3 with PDBID 4F4P
- 2020 DOCK tutorial 4 with PDBID 6UZW
- 2020 DOCK tutorial 4 with PDBID XXXX
- 2020 Denovo tutorial 1 with PDBID 3VJK
- 2020 Denovo tutorial 2 with PDBID 2GQG
- 2020 Denovo tutorial 3 with PDBID 4F4P
- 2020 Denovo tutorial 4 with PDBID 6UZW
- 2021-2022 AMS-532 Fall-Spring
- 2021 AMBER tutorial 1 with PDBID 1HW9
- 2021 AMBER tutorial 3 with PDBID 1S19
- 2021 AMS-535 Fall
- 2021 DOCK tutorial 1 with PDBID 1HW9
- 2021 DOCK tutorial 2 with PDBID 2ZD1
- 2021 DOCK tutorial 3 with PDBID 1S19
- 2021 DOCK tutorial 4 with PDBID 1EFY
- 2021 Denovo tutorial 1 with PDBID 1HW9
- 2021 Denovo tutorial 2 with PDBID 2ZD1
- 2021 Denovo tutorial 3 with PDBID 1S19
- 2021 Denovo tutorial 4 with PDBID 1EFY
- 2022-2023 AMS-532 Fall-Spring
- 2022 AMBER tutorial 1 with PDBID 6ME2
- 2022 AMBER tutorial 3 with PDBID 1X70
- 2022 AMS-535 Fall
- 2022 Covalent docking tutorial updated with PDB xxxx
- 2022 DOCK tutorial 1 with PDBID 6ME2
- 2022 DOCK tutorial 2 with PDBID 4ZUD
- 2022 DOCK tutorial 3 with PDBID 1X70
- 2022 Denovo tutorial 1 with PDBID 6ME2
- 2022 Denovo tutorial 3 with PDBID 1X70
- 2022 RCR GROUP MEETING
- 2023 AMBER tutorial 1 with PDBID 4S0V
- 2023 AMBER tutorial 2 with PDBID 3WZE
- 2023 AMBER tutorial 3 with PDBID 2P16
- 2023 DOCK tutorial 1 with PDBID 4S0V
- 2023 DOCK tutorial 2 with PDBID 3WZE
- 2023 DOCK tutorial 3 with PDBID 2P16
- 2023 Denovo tutorial 1 with PDBID 4S0V
- 2023 Denovo tutorial 2 with PDBID 3WZE
- 2023 Denovo tutorial 3 with PDBID 2P16
- 3D Analog Library Generation Using Pubchem and Zinc
- AMBER Lipid Tutorials
- AMS-531 Laboratory Rotations in Computational Biology
- AMS-532: Lab Rotations/Journal Club Guidelines
- AMS-532 Guidlines
- Activating your Seawulf Account
- Amber on Seawulf (compilation)
- Amber to mol2 (protein)
- Amber to pdb
- Analog Library - Pubchem & Zinc
- Analysis Tools Repository
- Announcements: Fall 2013
- Apply for cluster
- Archiving old data
- AutoDock4 Benchmark Results
- AutoDock4 Pose Reproduction Tutorial
- AutoDock Vina Benchmark Results
- AutoDock Vina Pose Reproduction Tutorial
- Automated Families generation from the Protein Databank
- Automated Family generation from PDB
- BOSS Pure Liquid Simulation Notes
- Blocked Standard Error of the Mean
- CONGA Parameter List
- CVS Commands
- C Shell Scripting
- Cancer
- Chimera
- Cluster compilations
- Clustering in R
- Coming Soon
- Common Errors - ctrl M
- Compiling Applications for BG/L
- Compiling GROMACS on Cluster
- Config
- DOCK6 POSE Reproduction
- DOCK Abbreviations Guide
- DOCK Benchmarking
- DOCK CV Benchmarking
- DOCK CV Development Goals
- DOCK CV Input File(s)
- DOCK Compilation
- DOCK DN Benchmarking
- DOCK DN Development Goals
- DOCK DN Input File(s)
- DOCK DN Parameters
- DOCK Denovo Refinement
- DOCK Denovo Run
- DOCK GA Developer Progress
- DOCK GA Development Goals
- DOCK GA Parameter List
- DOCK GA Parameters
- DOCK GIST Parameters
- DOCK Installation
- DOCK Release Objectives
- DOCK VS Benchmarking
- DOCK VS Development Goals
- De Novo Design
- De novo Benchmarking
- De novo Developer Progress
- Dell 5110cn Printer
- Development Goals Archive
- Disulfide.txt
- Drug-like organic molecules
- Energy Scoring Method in Grid
- Ethernet Cables
- Example of an CONGA Input file
- Example of an Ensemble Evolution Input file
- Example of an Input file
- Example of an Single Molecule Evolution Input file
- Example scripts
- Families in the Protein Databank
- Flex.in
- Footprint Plot Visualization
- Fourier fit
- Fragment Library Generation
- Gdb (GNU Debugger)
- General Dock Development Goals
- Genion.mdp
- Get Job ids to use for llcancel
- Get time estimate for free blocks
- Get time for job completion
- Ghostscript
- Grid.in
- HIV/AIDS
- Histograms in R
- How to purchase compounds for Rizzo lab
- INSPH
- Influenza
- Installing DOCK
- Installing MSMS for VMD
- Integration.pl
- Joe and Brian de novo stuff
- Joint Group Meeting 2007-2009
- Joint Group Meeting 2010
- Journal Articles from UCSF
- Ligand Enrichment Tutorial
- LoadLeveler Chain Jobs
- MOE
- MPICH
- Make Unique script usage
- Make surface
- Making images for publication using vmd
- Method development
- NAMD Amber inputs
- NAMD to mol2
- No t4 step1 inputgen.bash
- No t4 step2 equiprod.bash
- No t4 step2 min.bash
- No t4 step3 inputgen.bash
- Nonstandard residues prep
- Octave
- Optimize Polar Hydrogens
- Other Meetings
- PDFCreator
- Parameter List
- Past Announcements
- Pdb to mol2
- Per-residue energy decompositions
- Ps.m2p
- Ptraj
- Pylab
- RGD
- Reference.vmd.script
- Release
- Remove waters from trajectories
- Rename files in Unix
- Research Foundation
- Restraint.vmd.script
- Restraint01.pdb
- Restraint04.pdb
- Rigid.in
- Rizzo Lab Members and Contact Information
- Rizzo Lab Publications
- Rizzo Lab Research
- Rotation students Wiki
- Rsync
- Run.java.csh
- SB2011 testset
- SDF to mol2
- SLURM
- Sampling Methods
- Scoring Functions
- Seawulf Cluster Assessment
- Seawulf Items Needed
- Seawulf Programs Needed
- Secure Shell (ssh)
- Sed - Stream Editor in Unix
- Semester Checklist
- Sequence alignment
- Server Administration
- Setting up RSA SecureID token
- Setting up insurance through Research Foundation
- Setup ssh tunnel to NYBlue fen
- Showbox.in
- Showsph.in
- Slick awk tricks
- Sphere Generation
- Stupid awk tricks
- Submitting BlueGene Jobs
- TESTSET OBJECTIVES
- TIMD extraction.py
- TIMD integration.py
- TIMD integration prep.py
- Torsion environment
- Ubq md.mdp
- Ubq min.mdp
- Ubq npt.mdp
- Ubq nvt.mdp
- Unix
- Unix find
- Using convert command unix
- Valgrind
- Vi
- Virtual Screening Protocol
- Virtual Screening Protocol on BlueGene (IGF-IR system)
- Virtual Screening SOP
- Visiting BNL
- Vmd.rmsd.csh
- Ways to remove the first line
- Which Unix Distribution?
- Wiki Editing
- With t4 step1 inputgen.bash
- With t4 step2 equiprod.bash
- With t4 step2 min.bash
- With t4 step3 inputgen.bash
- X-Win32
- Xmgrace
- ZINC12 Database
- ZINC15 Database
- ZINC Database