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  • 2008-2009 AMS-532 Fall-Spring
    | 2008.09.12 || Balius, Trent || Rizzo || Inverse Design of ligands || Altman, M. D.; et al., HIV-1 protease inhib | 2008.10.24 || Goyal, Rashi || Rizzo || Relaxed Complex Scheme || Amaro, R.E. ; Baron, R. & McCammon, J.A. An im
    5 KB (647 words) - 23:53, 10 May 2009
  • 2008 AMS-535 Fall
    [http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Presentations/2007.ams535.example. ...ng/AMS532_AMS535_AMS536/Presentations/2008.09.08.ams535.rizzo.lect.001.pdf Rizzo, R.]
    26 KB (3,589 words) - 09:52, 6 August 2013
  • Testset Protocols
    Please consult page [[Rizzo Lab Downloads]] for the most up-to-date Rizzo lab test sets.
    7 KB (752 words) - 13:12, 4 February 2019
  • Joint Group Meeting 2007-2009
    | 12th Feb 2008 || Sudipto Mukherjee || Rizzo || Docking Testset and Improvements in Docking Protocol | 08th Jul 2008 || Trent Balius || Rizzo || Inhibition and Conformational Shifts of EGFR Tyrosine Kinase Domain Usin
    2 KB (319 words) - 12:29, 7 April 2010
  • Which Unix Distribution?
    On rizzo.ams.sunysb.edu this produces
    233 bytes (34 words) - 16:36, 8 September 2009
  • Past Announcements
    :# On the day of your presentation, '''please email me and Dr. Rizzo the following''': (a) three potential exam questions and (b) presentation i :#The presentation list has been updated. Dr. Rizzo and I have agreed to keep ''Replica Exchange'' as is.
    8 KB (1,353 words) - 22:11, 9 December 2010
  • Joint Group Meeting 2010
    | 20 May 2010 || Sudipto Mukherjee || Rizzo || Docking Validation Resources: Protein Family and Ligand Flexibility Expe
    903 bytes (107 words) - 13:57, 19 October 2010
  • 2010 AMS-535 Fall
    * [http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Presentations/ams535.example.quest ...ng/AMS532_AMS535_AMS536/Presentations/2010.09.01.ams535.rizzo.lect.001.pdf Rizzo, R.]
    27 KB (3,741 words) - 09:59, 6 August 2013
  • Virtual Screening Protocol
    In this document, the current Rizzo group protocol will be described in detail. This protocol has be through s
    15 KB (1,949 words) - 12:10, 4 December 2018
  • 2010 AMS-536 Spring
    | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.student.info.doc
    6 KB (744 words) - 17:23, 5 August 2013
  • 2010 AMBER Tutorial with Biotin and Streptavidin
    For additional Rizzo Lab tutorials see [[AMBER Tutorials]]. * Note that is only applies to AMS536 (or Rizzo lab rotation) students and is specific for our computer setup.
    34 KB (5,393 words) - 10:22, 28 February 2012
  • 2010 DOCK tutorial with Streptavidin
    For additional Rizzo Lab tutorials see [[DOCK Tutorials]]. This tutorial was developed collabora
    22 KB (2,471 words) - 18:54, 7 May 2012
  • 2009 AMS-536 Spring
    | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.student.info.doc
    6 KB (696 words) - 17:22, 5 August 2013
  • Rizzo Lab Downloads
    **Rizzo, R. C.; Aynechi, T.; Case, D. A.; Kuntz, I. D. Estimation of Absolute Free **Mukherjee, S.; Balius, T.E.; Rizzo, R. C. Docking Validation Resources: Protein Family and Ligand Flexibility
    1 KB (161 words) - 19:13, 18 November 2021
  • 2009 AMS-535 Fall
    [http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Presentations/2007.ams535.example. ...ng/AMS532_AMS535_AMS536/Presentations/2009.09.02.ams535.rizzo.lect.001.pdf Rizzo, R.]
    28 KB (3,785 words) - 09:57, 6 August 2013
  • 2009 AMBER tutorial with Trpcage
    For additional Rizzo Lab tutorials see [[AMBER Tutorials]]. *[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/MDtutorial_Amber10.pdf MD
    25 KB (4,118 words) - 11:01, 31 January 2011
  • 2009 DOCK tutorial with neuraminidase
    For additional Rizzo Lab tutorials see [[DOCK Tutorials]]. vdw_definition_file /home/rizzo/AMS536software/dock6/parameters/vdw_AMBER_parm99.defn
    32 KB (3,664 words) - 11:02, 31 January 2011
  • 2009-2010 AMS-532 Fall-Spring
    | 2009.11.11 || Balius, Trent || Rizzo Group || Clustering MD simulations || Shao, J., et al.; Clustering molecula | 2010.04.14 || Falk, Adam|| Rizzo|| Thermodynamic Integration|| Steinbrecher, T., Mobley, D.L., Case, D.A.; N
    5 KB (591 words) - 12:32, 12 August 2010
  • Rotation students Wiki
    ...paragraph describing the project you will be doing during your rotation in Rizzo Group. Also include the specific programs (e.g. DOCK, AMBER, NAMD) you wil ...n etc). In the second section, indicate “'''Laboratory Rotation Student: Rizzo Research Group'''” under “Title of Proposal”. The paragraph describin
    1 KB (209 words) - 15:02, 8 December 2009
  • 2010-2011 AMS-532 Fall-Spring
    ...o professor Rizzo and his students （Trent Balius and Lingling Jiang）. Rizzo lab is located in Room 3-129, Math Tower. | 2010.11.17 || Balius, Trent || Rizzo || Drug design ||
    10 KB (1,385 words) - 15:22, 5 August 2013

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