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  • * [[How to purchase compounds for Rizzo lab]]
    3 KB (307 words) - 09:56, 16 June 2021
  • 2 KB (263 words) - 11:13, 11 February 2019
  • #REDIRECT [[Rizzo Lab Information and Tutorials]]
    49 bytes (6 words) - 14:31, 5 February 2008
  • 23 bytes (3 words) - 15:29, 5 February 2008
  • #REDIRECT [[Rizzo Lab Members and Contact Information]]
    55 bytes (7 words) - 11:45, 2 March 2008
  • ! style="width:50%" |Robert C. Rizzo [[Image: Rizzo_lab_2019.png|thumb|center|4000px|'''Current 2019 Rizzo Lab Members:''' ''from left to right'' Stephen, Guilherme, Rodger, Rob, Chr
    6 KB (711 words) - 16:05, 28 February 2022
  • 23 bytes (3 words) - 11:21, 2 March 2008
  • **Rizzo, R. C.; Aynechi, T.; Case, D. A.; Kuntz, I. D. Estimation of Absolute Free **Mukherjee, S.; Balius, T.E.; Rizzo, R. C. Docking Validation Resources: Protein Family and Ligand Flexibility
    1 KB (161 words) - 19:13, 18 November 2021
  • Under the broad umbrella of Computational Structural Biology, research in the Rizzo lab involves Development, Validation, and Application of improved atomic-le ...ion Databases, ringo.ams.sunysb.edu/index.php/Rizzo_Lab_Downloads, and (c) Rizzo Group Online Tutorials, ringo.ams.sunysb.edu/index.php/DOCK_Tutorials. Imp
    9 KB (1,258 words) - 15:50, 5 November 2020
  • # Bausch, J. W.; '''Rizzo, R. C.'''; Sneddon, L. G.; Wille, A. E.; Williams, R. E. An ''Ab Initio''/I # '''Rizzo, R. C.'''; Jorgensen, W. L. OPLS All-Atom Model for Amines: Resolution of t
    16 KB (2,451 words) - 17:33, 5 November 2020
  • This is a guide for Rizzo lab members to purchasing compounds through Molport for testing. ...ess to Wolfmart. You can request access through Andrea Curran and with Dr. Rizzo's permission.
    2 KB (238 words) - 11:05, 5 May 2021

Page text matches

  • == Rizzo Lab Wiki: Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage == *[[Rizzo Lab Research]]
    588 bytes (71 words) - 12:32, 15 September 2015
  • * [[How to purchase compounds for Rizzo lab]]
    3 KB (307 words) - 09:56, 16 June 2021
  • ...fgreen/ Green], [http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/index.html Rizzo], [http://simmerlinglab.org Simmerling], [http://www.sunysb.edu/chemistry/ For the Rizzo lab members do the following for reimbursement:
    2 KB (371 words) - 12:03, 12 March 2012
  • For additional Rizzo Lab tutorials see [[DOCK Tutorials]]. [[http://rizzo.ams.sunysb.edu/~sudipto/1XBB.grid.tar.bz2 Sample prepared grids]]
    14 KB (2,032 words) - 10:30, 19 May 2011
  • For additional Rizzo Lab tutorials see [[AMBER Tutorials]].
    16 KB (2,476 words) - 11:01, 31 January 2011
  • vdw_definition_file /home/rizzo/AMS536software/dock6/parameters/vdw_AMBER_parm99.defn
    692 bytes (61 words) - 16:53, 20 February 2008
  • vdw_defn_file /home/rizzo/AMS536software/dock6/parameters/vdw_AMBER_parm99.defn flex_defn_file /home/rizzo/AMS536software/dock6/parameters/flex.defn
    3 KB (206 words) - 16:30, 5 June 2008
  • vdw_defn_file /home/rizzo/AMS536software/dock6/parameters/vdw_AMBER_parm99.defn flex_defn_file /home/rizzo/AMS536software/dock6/parameters/flex.defn
    4 KB (255 words) - 17:17, 11 February 2008
  • === <center> Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage </center> === |Dr. Robert C. Rizzo [631-632-9340, rizzorc@gmail.com]
    7 KB (1,038 words) - 15:18, 5 August 2013
  • There are two acounts every one in the rizzo group should have:
    210 bytes (34 words) - 11:28, 1 May 2015
  • # Justification of visit/assignment "Member of Robert C. Rizzo Lab, Stony Brook Univ."
    3 KB (531 words) - 13:53, 1 May 2015
  • For additional Rizzo Lab tutorials see [[DOCK Tutorials]].
    12 KB (1,877 words) - 11:02, 31 January 2011
  • ! style="width:50%" |Robert C. Rizzo [[Image: Rizzo_lab_2019.png|thumb|center|4000px|'''Current 2019 Rizzo Lab Members:''' ''from left to right'' Stephen, Guilherme, Rodger, Rob, Chr
    6 KB (711 words) - 16:05, 28 February 2022
  • ...the calculations are in my home directory on the Mathlab computers: /home/rizzo/AMS536projects/pureliquid. We will also discuss the details in class. Und Make copies from /home/rizzo/AMS536projects/pureliquid to your directory and edit the $MYdir parameter i
    6 KB (964 words) - 14:56, 27 February 2008
  • === <center> Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage </center> === | Dr. Robert C. Rizzo [631-632-8519, rizzorc -at- gmail.com]
    6 KB (828 words) - 13:39, 17 August 2021
  • === <center> Please see http://ringo.ams.sunysb.edu/~rizzo for Rizzo Group Homepage (Research and Teaching) </center> === | '''Instructor''' || Dr. Robert C. Rizzo [631-632-9340, robert dot rizzo -at- stonybrook.edu]
    7 KB (899 words) - 15:05, 17 August 2021
  • | 2006.09.26 || Mukherjee, Sudipto || Rizzo Group || scoring functions || Wang, R.; Lu, Y.; Wang, S., Comparative evalu | 2006.10.03 || Han, Ji || Rizzo, Simmerling, Green || MM-GBSA validation || Kuhn, B.; Gerber, P.; Schulz-Ga
    5 KB (689 words) - 13:22, 15 September 2008
  • | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.guidelines.pdf pr
    5 KB (654 words) - 12:44, 1 June 2016
  • | 2007.09.28 || Barsegian, Garen || Deng, Rizzo, Simmerling || dynamic positional info. || Jaeger, J.; Reinitz, J. On the d | 2007.10.12 || Goyal, Rashi || Rizzo Group|| avian influenza || Russell, R.J. ''et al''. The structure of H5N1 a
    5 KB (722 words) - 17:38, 10 September 2008
  • == Useful Matlab Functions written by Rizzo group ==
    2 KB (330 words) - 18:51, 14 January 2013
  • | 2008.09.12 || Balius, Trent || Rizzo || Inverse Design of ligands || Altman, M. D.; et al., HIV-1 protease inhib | 2008.10.24 || Goyal, Rashi || Rizzo || Relaxed Complex Scheme || Amaro, R.E. ; Baron, R. & McCammon, J.A. An im
    5 KB (647 words) - 23:53, 10 May 2009
  • [http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Presentations/2007.ams535.example. ...ng/AMS532_AMS535_AMS536/Presentations/2008.09.08.ams535.rizzo.lect.001.pdf Rizzo, R.]
    26 KB (3,589 words) - 09:52, 6 August 2013
  • Please consult page [[Rizzo Lab Downloads]] for the most up-to-date Rizzo lab test sets.
    7 KB (752 words) - 13:12, 4 February 2019
  • | 12th Feb 2008 || Sudipto Mukherjee || Rizzo || Docking Testset and Improvements in Docking Protocol | 08th Jul 2008 || Trent Balius || Rizzo || Inhibition and Conformational Shifts of EGFR Tyrosine Kinase Domain Usin
    2 KB (319 words) - 12:29, 7 April 2010
  • On rizzo.ams.sunysb.edu this produces
    233 bytes (34 words) - 16:36, 8 September 2009
  • :# On the day of your presentation, '''please email me and Dr. Rizzo the following''': (a) three potential exam questions and (b) presentation i :#The presentation list has been updated. Dr. Rizzo and I have agreed to keep ''Replica Exchange'' as is.
    8 KB (1,353 words) - 22:11, 9 December 2010
  • | 20 May 2010 || Sudipto Mukherjee || Rizzo || Docking Validation Resources: Protein Family and Ligand Flexibility Expe
    903 bytes (107 words) - 13:57, 19 October 2010
  • * [http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Presentations/ams535.example.quest ...ng/AMS532_AMS535_AMS536/Presentations/2010.09.01.ams535.rizzo.lect.001.pdf Rizzo, R.]
    27 KB (3,741 words) - 09:59, 6 August 2013
  • In this document, the current Rizzo group protocol will be described in detail. This protocol has be through s
    15 KB (1,949 words) - 12:10, 4 December 2018
  • | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.student.info.doc
    6 KB (744 words) - 17:23, 5 August 2013
  • For additional Rizzo Lab tutorials see [[AMBER Tutorials]]. * Note that is only applies to AMS536 (or Rizzo lab rotation) students and is specific for our computer setup.
    34 KB (5,393 words) - 10:22, 28 February 2012
  • For additional Rizzo Lab tutorials see [[DOCK Tutorials]]. This tutorial was developed collabora
    22 KB (2,471 words) - 18:54, 7 May 2012
  • | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.student.info.doc
    6 KB (696 words) - 17:22, 5 August 2013
  • **Rizzo, R. C.; Aynechi, T.; Case, D. A.; Kuntz, I. D. Estimation of Absolute Free **Mukherjee, S.; Balius, T.E.; Rizzo, R. C. Docking Validation Resources: Protein Family and Ligand Flexibility
    1 KB (161 words) - 19:13, 18 November 2021
  • [http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Presentations/2007.ams535.example. ...ng/AMS532_AMS535_AMS536/Presentations/2009.09.02.ams535.rizzo.lect.001.pdf Rizzo, R.]
    28 KB (3,785 words) - 09:57, 6 August 2013
  • For additional Rizzo Lab tutorials see [[AMBER Tutorials]]. *[http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/MDtutorial_Amber10.pdf MD
    25 KB (4,118 words) - 11:01, 31 January 2011
  • For additional Rizzo Lab tutorials see [[DOCK Tutorials]]. vdw_definition_file /home/rizzo/AMS536software/dock6/parameters/vdw_AMBER_parm99.defn
    32 KB (3,664 words) - 11:02, 31 January 2011
  • | 2009.11.11 || Balius, Trent || Rizzo Group || Clustering MD simulations || Shao, J., et al.; Clustering molecula | 2010.04.14 || Falk, Adam|| Rizzo|| Thermodynamic Integration|| Steinbrecher, T., Mobley, D.L., Case, D.A.; N
    5 KB (591 words) - 12:32, 12 August 2010
  • ...paragraph describing the project you will be doing during your rotation in Rizzo Group. Also include the specific programs (e.g. DOCK, AMBER, NAMD) you wil ...n etc). In the second section, indicate “'''Laboratory Rotation Student: Rizzo Research Group'''” under “Title of Proposal”. The paragraph describin
    1 KB (209 words) - 15:02, 8 December 2009
  • ...o professor Rizzo and his students (Trent Balius and Lingling Jiang). Rizzo lab is located in Room 3-129, Math Tower. | 2010.11.17 || Balius, Trent || Rizzo || Drug design ||
    10 KB (1,385 words) - 15:22, 5 August 2013
  • Every time a member of the Rizzo Group compiles a program on Cluster we should write a README file that docu ## Runing of the amber test and a rizzo lab bench mark imply that sander.MPI is working (2010/09/15).
    2 KB (287 words) - 16:44, 15 September 2010
  • | Dr. Robert C. Rizzo [631-632-8519, rizzorc@gmail.com] *[http://ringo.ams.sunysb.edu/~rizzo/StonyBrook/teaching/AMS532_AMS535_AMS536/Projects/project.student.info.doc
    6 KB (754 words) - 17:23, 5 August 2013
  • For additional Rizzo Lab tutorials see [[AMBER Tutorials]]. cd ~rizzo/AMBER_Tutorial/000.AMBERFILES .
    40 KB (6,379 words) - 15:51, 25 March 2011
  • For additional Rizzo Lab tutorials see [[DOCK Tutorials]]. This tutorial is based on the [[2010
    20 KB (2,410 words) - 18:55, 7 May 2012
  • % Robert C. Rizzo Research Group
    2 KB (272 words) - 08:23, 6 May 2011
  • Here are some tutorials on the Rizzo lab wiki for running MD: Here is also some information on NAMD from the rizzo lab wiki:
    7 KB (912 words) - 10:31, 17 September 2013
  • loadamberparams gaff.dat.rizzo
    13 KB (1,725 words) - 21:40, 23 May 2011
  • Under the broad umbrella of Computational Structural Biology, research in the Rizzo lab involves Development, Validation, and Application of improved atomic-le ...ion Databases, ringo.ams.sunysb.edu/index.php/Rizzo_Lab_Downloads, and (c) Rizzo Group Online Tutorials, ringo.ams.sunysb.edu/index.php/DOCK_Tutorials. Imp
    9 KB (1,258 words) - 15:50, 5 November 2020
  • ...ct. Func. Bioinformatics, 2007, 67, 630-642. [http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/publications/rizzo015.pdf PDF] .../pubs.acs.org/doi/abs/10.1021/bi901915g WEB] [http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/publications/rizzo020.pdf PDF]
    702 bytes (92 words) - 14:52, 24 May 2011
  • .... Bioorg. Med. Chem. Lett., 2009, 19, 47-50. [http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/publications/rizzo017.pdf PDF] .../pubs.acs.org/doi/abs/10.1021/bi900729a WEB] [http://rizzo.ams.sunysb.edu/~rizzo/StonyBrook/publications/rizzo019.pdf PDF]
    801 bytes (113 words) - 14:31, 24 May 2011

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