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- 09:25, 18 February 2009 Pholden (talk | contribs) uploaded File:AnnealingRMSD.bmp (Simulated Annealing of TrpCage vs. Native State (1L2Y))
- 09:30, 16 February 2009 Pholden (talk | contribs) uploaded File:350KRMSD.bmp (RMSD plot of the backbone of a simulation of TrpCage at 350K vs. the native state. Native state taken from first model of 1L2Y.pdb.)
- 09:28, 16 February 2009 Pholden (talk | contribs) uploaded File:350KHbond.bmp (The Trp H and Arg O interaction in TrpCage. Data from a simulation run at 350K.)
- 14:42, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagesimhbondgraph.bmp (Graph of distance between Trp H and Arg O in simulation. Note it never achieves appropriate H-Bond distance. It is 1.87A in the native structure.)
- 14:40, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagesimhbond.bmp (Reverted to earlier revision)
- 14:37, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagesimhbond.bmp (Distance between TRP H and ARG O. In the native protein, it is measured to be 1.87A.)
- 11:13, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagesimhbond.bmp (An image of the simulated trpcage protein with the "hbond" between TRP and the ARG oxygen labeled.)
- 11:11, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagenativehbond.bmp (The trpcage native structure with the hbond between TRP and the ARG oxygen labeled.)
- 10:48, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagecomparison.bmp (Comparison of native trpcage (white) vs. simulation trpcage (orange) with the TRP residue highlighted in green)
- 10:45, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagecomparison.bmp
- 10:39, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagecomparison.bmp (Comparison of Native (white) Trpcage vs. Simulation (Orange))
- 10:27, 14 February 2009 Pholden (talk | contribs) uploaded File:Trpcagermsd.bmp (RMSD of trpcage simulation vs. 1st model in 1L2Y)
