Difference between revisions of "DOCK Tutorials"
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| − | + | *[[2019 DOCK tutorial 1 with PDBID ]] | |
| − | + | *[[2019 DOCK tutorial 2 with PDBID ]] | |
| + | *[[2019 DOCK tutorial 3 with PDBID ]] | ||
| + | *[[2018 DOCK tutorial 1 with PDBID 2NNQ]] | ||
| + | *[[2018 DOCK tutorial 2 with PDBID 1C87]] | ||
| + | *[[2017 DOCK tutorial 1 with PDB 4QMZ NEW]] | ||
| + | *[[2017 DOCK tutorial 2 with PDB 3GPL NEW]] | ||
| + | *[[2016 DOCK tutorial with Beta Trypsin]] | ||
| + | *[[2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)]] | ||
| + | *[[2014 DOCK tutorial with HIV Protease]] | ||
| + | *[[2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase]] | ||
| + | *[[2012 DOCK tutorial with Streptavidin]] | ||
| + | *[[2011 DOCK tutorial with Streptavidin]] | ||
| + | *[[2010 DOCK tutorial with Streptavidin]] | ||
*[[2009 DOCK tutorial with neuraminidase]] | *[[2009 DOCK tutorial with neuraminidase]] | ||
*[[2008 DOCK tutorial with 1LAH]] | *[[2008 DOCK tutorial with 1LAH]] | ||
*[[2008 DOCK tutorial with Gleevec]] | *[[2008 DOCK tutorial with Gleevec]] | ||
| + | |||
| + | Disclaimer: The tutorials are written by students learning to use dock in a classroom setting. A new dock tutorial is created every year by the collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB. | ||
| + | |||
| + | Some of the input files may have been modified to reduce runtime in order to work well in a classroom setting. For production work, please consult the current [http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm DOCK Manual] for details. | ||
Latest revision as of 14:26, 30 January 2019
- 2019 DOCK tutorial 1 with PDBID
- 2019 DOCK tutorial 2 with PDBID
- 2019 DOCK tutorial 3 with PDBID
- 2018 DOCK tutorial 1 with PDBID 2NNQ
- 2018 DOCK tutorial 2 with PDBID 1C87
- 2017 DOCK tutorial 1 with PDB 4QMZ NEW
- 2017 DOCK tutorial 2 with PDB 3GPL NEW
- 2016 DOCK tutorial with Beta Trypsin
- 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)
- 2014 DOCK tutorial with HIV Protease
- 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase
- 2012 DOCK tutorial with Streptavidin
- 2011 DOCK tutorial with Streptavidin
- 2010 DOCK tutorial with Streptavidin
- 2009 DOCK tutorial with neuraminidase
- 2008 DOCK tutorial with 1LAH
- 2008 DOCK tutorial with Gleevec
Disclaimer: The tutorials are written by students learning to use dock in a classroom setting. A new dock tutorial is created every year by the collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB.
Some of the input files may have been modified to reduce runtime in order to work well in a classroom setting. For production work, please consult the current DOCK Manual for details.
