2024 AMBER tutorial 1 with PDBID 2ITO

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Contents

1 Introduction
- 1.1 Getting Started
2 Structure
3 Force Field Parameters
4 TLeap
5 Equilibration
6 Production
7 Analysis
- 7.1 RMSD
- 7.2 MM/GBSA

Introduction

Getting Started

Structure

Force Field Parameters

TLeap

Equilibration

Production

Analysis

RMSD

MM/GBSA

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