User contributions

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• 15:30, 2 March 2022 (diff | hist) . . (+1,092)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:07, 2 March 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:06, 2 March 2022 (diff | hist) . . (+77)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 13:51, 2 March 2022 (diff | hist) . . (+355)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 13:38, 2 March 2022 (diff | hist) . . (+29)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 10:47, 2 March 2022 (diff | hist) . . (-1)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎=Opening files in Chimera)
• 12:13, 1 March 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Searching for/Downloading files from the PDB)
• 12:12, 1 March 2022 (diff | hist) . . (+4)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Searching for/Downloading files from the PDB)
• 12:12, 1 March 2022 (diff | hist) . . (+15)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Opening files in Chimera)
• 12:10, 1 March 2022 (diff | hist) . . (+7)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Visual configurations)
• 12:10, 1 March 2022 (diff | hist) . . (+11)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Selecting substructures)
• 12:09, 1 March 2022 (diff | hist) . . (+6)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Modifying selected substructures)
• 12:09, 1 March 2022 (diff | hist) . . (+16)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Modifying selected substructures)
• 12:08, 1 March 2022 (diff | hist) . . (+8)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Saving sessions)
• 12:08, 1 March 2022 (diff | hist) . . (+6)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Initial investigation/preparation)
• 12:08, 1 March 2022 (diff | hist) . . (+12)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Isolating the ligand and receptor)
• 12:07, 1 March 2022 (diff | hist) . . (+64)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Isolating the ligand and receptor)
• 12:04, 1 March 2022 (diff | hist) . . (+71)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Initial investigation/preparation)
• 12:01, 1 March 2022 (diff | hist) . . (+54)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Isolating the ligand and receptor)
• 12:00, 1 March 2022 (diff | hist) . . (+790)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Isolating the ligand and receptor)
• 22:08, 28 February 2022 (diff | hist) . . (+820)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Initial investigation/preparation)
• 21:59, 28 February 2022 (diff | hist) . . (-86)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Initial investigation/preparation)
• 21:51, 28 February 2022 (diff | hist) . . (+216)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Organizing File Directories)
• 21:42, 28 February 2022 (diff | hist) . . (+4)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Required Software)
• 21:42, 28 February 2022 (diff | hist) . . (-1)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Required Software)
• 21:42, 28 February 2022 (diff | hist) . . (+56)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Chimera)
• 21:42, 28 February 2022 (diff | hist) . . (-55)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Required Software)
• 21:41, 28 February 2022 (diff | hist) . . (+199)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎6ME2)
• 21:13, 28 February 2022 (diff | hist) . . (-84)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Opening and viewing PDB files)
• 21:06, 28 February 2022 (diff | hist) . . (-12)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Required Software)
• 21:04, 28 February 2022 (diff | hist) . . (+2)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Required Software)
• 21:04, 28 February 2022 (diff | hist) . . (+20)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Required Software)
• 21:03, 28 February 2022 (diff | hist) . . (+6)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Chimera)
• 21:03, 28 February 2022 (diff | hist) . . (+248)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎DOCK)
• 20:58, 28 February 2022 (diff | hist) . . (+650)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎File transfers to/from Seawulf)
• 20:52, 28 February 2022 (diff | hist) . . (+347)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Logging in and navigating SeaWulf)
• 17:05, 28 February 2022 (diff | hist) . . (+158)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:01, 28 February 2022 (diff | hist) . . (+155)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Logging in and navigating SeaWulf)
• 16:35, 28 February 2022 (diff | hist) . . (+4,995)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:25, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4zud minimized ligand and flex pose.png ‎ (top)
• 16:25, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4zud minimized ligand and FAD pose.png ‎ (top)
• 16:22, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4zud minimized ligand and rigid pose(1).png ‎ (top)
• 16:22, 28 February 2022 (diff | hist) . . (+4,704)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:22, 28 February 2022 (diff | hist) . . (+981)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Logging in and navigating Seawulf)
• 15:58, 28 February 2022 (diff | hist) . . (+1,047)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Basics of the Command Line/Terminal)
• 15:46, 28 February 2022 (diff | hist) . . (+1,762)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Basics of the Command Line/Terminal)
• 15:41, 28 February 2022 (diff | hist) . . (+466)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Box Generation)
• 15:35, 28 February 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:33, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4zud pdb mutated back to A53I new.png ‎ (top)
• 15:27, 28 February 2022 (diff | hist) . . (+149)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Basics of the Command Line/Terminal)
• 15:25, 28 February 2022 (diff | hist) . . (+136)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Basics of the Command Line/Terminal)
• 15:23, 28 February 2022 (diff | hist) . . (+163)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Chimera)
• 15:22, 28 February 2022 (diff | hist) . . (-162)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Saving files: file formats)
• 14:54, 28 February 2022 (diff | hist) . . (+5)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎ (→‎Fragment Library Generation)
• 14:52, 28 February 2022 (diff | hist) . . (+192)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:50, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4ZUD highestFPscore denovo molecule.png ‎ (top)
• 14:50, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4ZUD lowestFPscore denovo molecule.png ‎ (top)
• 14:50, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4ZUD minimized lig(1).png ‎ (top)
• 14:49, 28 February 2022 (diff | hist) . . (+6,626)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:44, 28 February 2022 (diff | hist) . . (+771)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:35, 28 February 2022 (diff | hist) . . (+92)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:34, 28 February 2022 (diff | hist) . . (+6)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:33, 28 February 2022 (diff | hist) . . (-156)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:31, 28 February 2022 (diff | hist) . . (+13)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:30, 28 February 2022 (diff | hist) . . (+6)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:30, 28 February 2022 (diff | hist) . . (+14)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:29, 28 February 2022 (diff | hist) . . (0)‎ . . N File:Min ligand.png ‎ (top)
• 14:28, 28 February 2022 (diff | hist) . . (-7)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:28, 28 February 2022 (diff | hist) . . (+14)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:27, 28 February 2022 (diff | hist) . . (+3)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:26, 28 February 2022 (diff | hist) . . (+350)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:25, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4ZUD minimized lig outline & scaffold(1).png ‎ (top)
• 14:23, 28 February 2022 (diff | hist) . . (+532)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 14:14, 28 February 2022 (diff | hist) . . (-2)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 14:14, 28 February 2022 (diff | hist) . . (+4,504)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Minimization)
• 13:42, 28 February 2022 (diff | hist) . . (+237)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Saving sessions)
• 13:36, 28 February 2022 (diff | hist) . . (-2)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Box Generation)
• 13:36, 28 February 2022 (diff | hist) . . (+12)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Box Generation)
• 13:36, 28 February 2022 (diff | hist) . . (+57)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Box Generation)
• 13:34, 28 February 2022 (diff | hist) . . (-2)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Grid Generation)
• 13:34, 28 February 2022 (diff | hist) . . (+7)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Grid Generation)
• 13:33, 28 February 2022 (diff | hist) . . (+96)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Grid Generation)
• 13:30, 28 February 2022 (diff | hist) . . (+50)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Directory Preparation)
• 13:26, 28 February 2022 (diff | hist) . . (+1,410)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Grid Generation)
• 13:22, 28 February 2022 (diff | hist) . . (+4,098)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 13:01, 28 February 2022 (diff | hist) . . (+3)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 12:58, 28 February 2022 (diff | hist) . . (+232)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎ (→‎Fragment Library Generation)
• 12:53, 28 February 2022 (diff | hist) . . (+132)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 12:50, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4ZUD minimized lig outline & linkers.png ‎ (top)
• 12:49, 28 February 2022 (diff | hist) . . (0)‎ . . N File:4ZUD minimized lig outline & sidechains.png ‎ (top)
• 12:48, 28 February 2022 (diff | hist) . . (+2,864)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 12:40, 28 February 2022 (diff | hist) . . (+559)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 12:32, 28 February 2022 (diff | hist) . . (+709)‎ . . 2022 Denovo tutorial 2 with PDBID 4ZUD ‎
• 12:21, 28 February 2022 (diff | hist) . . (+270)‎ . . N 2022 Denovo tutorial 2 with PDBID 4ZUD ‎ (Created page with "=='''De Novo Design'''== De novo design refers to the process of generating novel ligands in an effort to identify molecules of physiological significance. ==='''Fragment L...")
• 17:12, 23 February 2022 (diff | hist) . . (+132)‎ . . DOCK DN Tutorials ‎
• 16:41, 23 February 2022 (diff | hist) . . (-90)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎
• 16:40, 23 February 2022 (diff | hist) . . (+103)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎
• 16:13, 23 February 2022 (diff | hist) . . (+4)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:08, 23 February 2022 (diff | hist) . . (+4)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:57, 23 February 2022 (diff | hist) . . (0)‎ . . N File:4zud pdb mutated I53A (1).png ‎ (top)
• 15:51, 23 February 2022 (diff | hist) . . (+298)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:15, 23 February 2022 (diff | hist) . . (+40)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎DOCKING)
• 14:06, 23 February 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:02, 23 February 2022 (diff | hist) . . (0)‎ . . N File:4zud rotamers ILE53 chimera rotamers window.png ‎ (top)
• 18:50, 21 February 2022 (diff | hist) . . (+4)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Ligand Preparation)
• 18:49, 21 February 2022 (diff | hist) . . (+1)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎DOCKING)
• 18:48, 21 February 2022 (diff | hist) . . (-14)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 18:46, 21 February 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 18:43, 21 February 2022 (diff | hist) . . (+1,172)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 18:13, 21 February 2022 (diff | hist) . . (+776)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 18:04, 21 February 2022 (diff | hist) . . (-11)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:57, 21 February 2022 (diff | hist) . . (+7)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:51, 21 February 2022 (diff | hist) . . (+100)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:46, 21 February 2022 (diff | hist) . . (-34)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:42, 21 February 2022 (diff | hist) . . (+58)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:39, 21 February 2022 (diff | hist) . . (+570)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:15, 21 February 2022 (diff | hist) . . (+1)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:09, 21 February 2022 (diff | hist) . . (+2)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 17:05, 21 February 2022 (diff | hist) . . (+410)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:58, 21 February 2022 (diff | hist) . . (+67)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:44, 21 February 2022 (diff | hist) . . (+394)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:27, 21 February 2022 (diff | hist) . . (+83)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 16:07, 21 February 2022 (diff | hist) . . (+109)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:47, 21 February 2022 (diff | hist) . . (+1)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:46, 21 February 2022 (diff | hist) . . (+325)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:37, 21 February 2022 (diff | hist) . . (+195)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:15, 21 February 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 15:14, 21 February 2022 (diff | hist) . . (+1,153)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:55, 21 February 2022 (diff | hist) . . (+251)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Docking)
• 14:52, 21 February 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎rigid docking)
• 14:51, 21 February 2022 (diff | hist) . . (-6)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Generating Box/Grid)
• 14:50, 21 February 2022 (diff | hist) . . (-8)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Surface Spheres)
• 14:50, 21 February 2022 (diff | hist) . . (-6)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Isolating the ligand and receptor)
• 14:49, 21 February 2022 (diff | hist) . . (+19)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Docking)
• 14:48, 21 February 2022 (diff | hist) . . (+4)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Dock Prep)
• 14:46, 21 February 2022 (diff | hist) . . (+581)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Dock Prep)
• 14:39, 21 February 2022 (diff | hist) . . (+550)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:37, 21 February 2022 (diff | hist) . . (+321)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Dock Prep)
• 14:31, 21 February 2022 (diff | hist) . . (+2,102)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎First-steps for visualizations in Chimera)
• 14:30, 21 February 2022 (diff | hist) . . (+924)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:16, 21 February 2022 (diff | hist) . . (+276)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:12, 21 February 2022 (diff | hist) . . (+728)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:05, 21 February 2022 (diff | hist) . . (+286)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 14:03, 21 February 2022 (diff | hist) . . (0)‎ . . N File:4zud pdb.png ‎ (top)
• 13:57, 21 February 2022 (diff | hist) . . (+34)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎First-steps for visualizations in Chimera)
• 13:57, 21 February 2022 (diff | hist) . . (+253)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎First-steps for visualizations in Chimera)
• 13:50, 21 February 2022 (diff | hist) . . (+377)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 13:44, 21 February 2022 (diff | hist) . . (+457)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 13:36, 21 February 2022 (diff | hist) . . (+280)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Searching for/Downloading files from the PDB)
• 13:34, 21 February 2022 (diff | hist) . . (+193)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎
• 13:33, 21 February 2022 (diff | hist) . . (+47)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Chimera)
• 13:30, 21 February 2022 (diff | hist) . . (+378)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Searching for/Downloading files from the PDB)
• 13:20, 21 February 2022 (diff | hist) . . (+32)‎ . . 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (→‎Introduction)
• 13:19, 21 February 2022 (diff | hist) . . (+18)‎ . . N 2022 DOCK tutorial 2 with PDBID 4ZUD ‎ (Created page with "== Introduction ==")
• 19:34, 7 February 2022 (diff | hist) . . (+51)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Chimera)
• 19:34, 7 February 2022 (diff | hist) . . (0)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎CHIMERA)
• 19:33, 7 February 2022 (diff | hist) . . (+41)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Introduction)
• 19:33, 7 February 2022 (diff | hist) . . (+3)‎ . . 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (→‎Logging and navigating Seawulf)
• 19:32, 7 February 2022 (diff | hist) . . (+1,705)‎ . . N 2022 DOCK tutorial 1 with PDBID 6ME2 ‎ (Created page with "= Introduction = ===DOCK=== (some info about DOCK) ===6ME2=== (some info about the structure) ===Required Software=== (chimera, dock,...) = Seawulf: Getting Started = ==...")
• 16:56, 7 February 2022 (diff | hist) . . (+126)‎ . . DOCK VS Tutorials ‎
• 01:59, 7 May 2021 (diff | hist) . . (+43)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎MMGBSA) (top)
• 01:57, 7 May 2021 (diff | hist) . . (-5)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎MMGBSA)
• 01:55, 7 May 2021 (diff | hist) . . (+22)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎MMGBSA)
• 01:54, 7 May 2021 (diff | hist) . . (+1,366)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎
• 01:44, 7 May 2021 (diff | hist) . . (+3,546)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎MD Analysis)
• 01:27, 7 May 2021 (diff | hist) . . (+26)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎
• 01:26, 7 May 2021 (diff | hist) . . (+116)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Production)
• 01:25, 7 May 2021 (diff | hist) . . (-7)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Production)
• 01:24, 7 May 2021 (diff | hist) . . (+666)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Production)
• 01:22, 7 May 2021 (diff | hist) . . (+1,619)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎
• 01:17, 7 May 2021 (diff | hist) . . (-5)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Equilibration)
• 01:17, 7 May 2021 (diff | hist) . . (+827)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Equilibration)
• 01:10, 7 May 2021 (diff | hist) . . (+473)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Equilibration)
• 01:07, 7 May 2021 (diff | hist) . . (0)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Equilibration)
• 01:07, 7 May 2021 (diff | hist) . . (+7,304)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎Equilibration)
• 00:58, 7 May 2021 (diff | hist) . . (+2,340)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎
• 00:52, 7 May 2021 (diff | hist) . . (+554)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎TLeap System)
• 00:49, 7 May 2021 (diff | hist) . . (+1,889)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎TLeap System)
• 00:39, 7 May 2021 (diff | hist) . . (+717)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎
• 00:33, 7 May 2021 (diff | hist) . . (+816)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (→‎1HW9 Structures)
• 00:29, 7 May 2021 (diff | hist) . . (+1,653)‎ . . 2021 AMBER tutorial 1 with PDBID 1HW9 ‎
• 00:20, 7 May 2021 (diff | hist) . . (+625)‎ . . N 2021 AMBER tutorial 1 with PDBID 1HW9 ‎ (Created page with " == '''Introduction''' == In this tutorial, we'll be exploring the wonders of molecular dynamics through the use of AMBER 16. AMBER 16 we'll help study the binding characteris...")
• 21:52, 3 May 2021 (diff | hist) . . (+30)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Energy Minimization) (top)
• 16:12, 3 May 2021 (diff | hist) . . (-652)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Generating the Box)
• 16:17, 23 April 2021 (diff | hist) . . (+1,146)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Virtual Screen)
• 15:27, 14 April 2021 (diff | hist) . . (+35)‎ . . 2020 AMBER tutorial with PDBID 3VJK ‎ (→‎Build system with TLeap) (top)
• 23:58, 11 April 2021 (diff | hist) . . (0)‎ . . 2021 AMBER tutorial 3 with PDBID 1S19 ‎ (→‎Input File) (top)
• 23:58, 11 April 2021 (diff | hist) . . (+11)‎ . . 2021 AMBER tutorial 3 with PDBID 1S19 ‎ (→‎Input File)
• 23:57, 11 April 2021 (diff | hist) . . (+162)‎ . . 2021 AMBER tutorial 3 with PDBID 1S19 ‎ (→‎Input File)
• 23:56, 11 April 2021 (diff | hist) . . (+44)‎ . . 2021 AMBER tutorial 3 with PDBID 1S19 ‎ (→‎Input Files)
• 10:46, 6 April 2021 (diff | hist) . . (0)‎ . . 2021 Denovo tutorial 2 with PDBID 2ZD1 ‎ (top)
• 10:43, 6 April 2021 (diff | hist) . . (+13,885)‎ . . 2021 Denovo tutorial 2 with PDBID 2ZD1 ‎
• 00:25, 6 April 2021 (diff | hist) . . (+1)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Directory and File Setup) (top)
• 00:25, 6 April 2021 (diff | hist) . . (+23)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Directory and File Setup)
• 00:23, 6 April 2021 (diff | hist) . . (+8)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Molecular Docking)
• 00:22, 6 April 2021 (diff | hist) . . (+6)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Receptor and Ligand Preparation)
• 00:21, 6 April 2021 (diff | hist) . . (+6)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎2ZD1: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with Rilpivirine)
• 18:22, 5 April 2021 (diff | hist) . . (+13,010)‎ . . N 2021 Denovo tutorial 2 with PDBID 2ZD1 ‎ (Created page with " = '''Introduction''' = == '''Learning Goals for this Tutorial''' == This tutorial will guide the student in performing a structure-based virtual screen of a large number of s...")
• 18:19, 5 April 2021 (diff | hist) . . (-1)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎
• 18:19, 5 April 2021 (diff | hist) . . (-2)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎
• 18:18, 5 April 2021 (diff | hist) . . (+340)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎
• 18:08, 5 April 2021 (diff | hist) . . (+305)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎
• 17:43, 5 April 2021 (diff | hist) . . (-14)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Molecular Docking)
• 16:30, 5 April 2021 (diff | hist) . . (+3)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎DOCK)
• 16:14, 5 April 2021 (diff | hist) . . (+8)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Receptor and Ligand Preparation)
• 16:13, 5 April 2021 (diff | hist) . . (-106)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Molecular Docking)
• 16:06, 5 April 2021 (diff | hist) . . (-4)‎ . . 2021 AMBER tutorial 3 with PDBID 1S19 ‎ (→‎RMSD)
• 15:56, 5 April 2021 (diff | hist) . . (0)‎ . . N File:1s19 rmsd.png ‎ (top)
• 15:55, 5 April 2021 (diff | hist) . . (+372)‎ . . 2021 AMBER tutorial 3 with PDBID 1S19 ‎ (→‎RMSD)
• 15:43, 5 April 2021 (diff | hist) . . (+2,178)‎ . . 2021 DOCK tutorial 1 with PDBID 1HW9 ‎ (→‎Fixed Anchor Docking)
• 15:41, 5 April 2021 (diff | hist) . . (+67)‎ . . 2021 DOCK tutorial 1 with PDBID 1HW9 ‎ (→‎Rigid Docking)
• 15:40, 5 April 2021 (diff | hist) . . (+1,305)‎ . . 2021 DOCK tutorial 1 with PDBID 1HW9 ‎ (→‎Rigid Docking)
• 15:39, 5 April 2021 (diff | hist) . . (+1,106)‎ . . 2021 DOCK tutorial 1 with PDBID 1HW9 ‎ (→‎Footprint Analysis)
• 15:12, 5 April 2021 (diff | hist) . . (+413)‎ . . 2021 DOCK tutorial 1 with PDBID 1HW9 ‎ (→‎Energy Minimization)
• 15:07, 5 April 2021 (diff | hist) . . (+766)‎ . . 2021 DOCK tutorial 1 with PDBID 1HW9 ‎ (→‎Energy Minimization)
• 14:37, 5 April 2021 (diff | hist) . . (+16)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Molecular Docking)
• 14:37, 5 April 2021 (diff | hist) . . (-39)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Techniques)
• 14:37, 5 April 2021 (diff | hist) . . (+530)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Molecular Docking)
• 14:33, 5 April 2021 (diff | hist) . . (+1)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Directory Setup)
• 14:32, 5 April 2021 (diff | hist) . . (+50)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Rescore)
• 14:30, 5 April 2021 (diff | hist) . . (+90)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Virtual Screen)
• 14:28, 5 April 2021 (diff | hist) . . (+47)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Cartesian Minimization)
• 14:25, 5 April 2021 (diff | hist) . . (+11)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Virtual Screen)
• 14:23, 5 April 2021 (diff | hist) . . (+5)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Molecular Footprint)
• 14:19, 5 April 2021 (diff | hist) . . (-12)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Molecular Footprint)
• 14:17, 5 April 2021 (diff | hist) . . (+1)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Flexible Docking)
• 14:16, 5 April 2021 (diff | hist) . . (0)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Fixed Anchor Docking)
• 14:15, 5 April 2021 (diff | hist) . . (+1)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Rigid Docking)
• 14:14, 5 April 2021 (diff | hist) . . (+15)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Energy Minimization)
• 14:13, 5 April 2021 (diff | hist) . . (-7)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Single Molecule Docking and Pose Reproduction)
• 14:12, 5 April 2021 (diff | hist) . . (+10)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Energy Minimization)
• 14:10, 5 April 2021 (diff | hist) . . (+16)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Energy Minimization)
• 14:09, 5 April 2021 (diff | hist) . . (-3)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Energy Minimization)
• 14:08, 5 April 2021 (diff | hist) . . (+1)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Techniques)
• 14:08, 5 April 2021 (diff | hist) . . (+639)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Structure-Based Virtual Screening)
• 14:07, 5 April 2021 (diff | hist) . . (-5)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Generate Spheres)
• 14:07, 5 April 2021 (diff | hist) . . (+4)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Generating the Box)
• 14:04, 5 April 2021 (diff | hist) . . (+47)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Generate Spheres)
• 14:01, 5 April 2021 (diff | hist) . . (0)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Generate Spheres)
• 13:59, 5 April 2021 (diff | hist) . . (0)‎ . . File:1efyligandwH.PNG ‎ (Stonybrook uploaded a new version of File:1efyligandwH.PNG) (top)
• 13:59, 5 April 2021 (diff | hist) . . (0)‎ . . N File:1efyligandwH.PNG ‎
• 13:58, 5 April 2021 (diff | hist) . . (-2)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Ligand Preparation)
• 13:54, 5 April 2021 (diff | hist) . . (+13)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Ligand Preparation)
• 13:53, 5 April 2021 (diff | hist) . . (+4)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Ligand Preparation)
• 13:52, 5 April 2021 (diff | hist) . . (0)‎ . . N File:1efyBuildStructure.PNG ‎ (top)
• 13:51, 5 April 2021 (diff | hist) . . (+445)‎ . . 2021 DOCK tutorial 4 with PDBID 1EFY ‎ (→‎Ligand Preparation)
• 13:46, 5 April 2021 (diff | hist) . . (0)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Learning Goals for this Tutorial)
• 13:25, 5 April 2021 (diff | hist) . . (0)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Computational Tools)
• 13:25, 5 April 2021 (diff | hist) . . (+1)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Learning Goals for this Tutorial)
• 13:25, 5 April 2021 (diff | hist) . . (-1)‎ . . 2021 DOCK tutorial 2 with PDBID 2ZD1 ‎ (→‎Techniques)

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