Difference between revisions of "Rizzo Lab Information and Tutorials"

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{| cellpadding=0 width=90%
 
*[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual]
 
*[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual]
*[[Tutorials]] - Includes: virtual screen, de novo design, genetic algorithm, covalent  
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*[[Tutorials]]  
*[[Benchmarking Lab SOP and Results]] - Includes: pose reproduction, crossdocking and database enrichment SOP and other algorithm results
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** virtual screen, de novo design, genetic algorithm, covalent  
*[[Virtual Screening Compound Ordering SOP]]
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*[[Benchmarking Protocols and Results]]  
<!-- *[[Testset Protocols]]-->
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** testset, pose reproduction, crossdocking, database enrichment SOP and other algorithm results
 
*[[Additional DOCK6 Information]]
 
*[[Additional DOCK6 Information]]
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** miscellaneous information for DOCK scoring functions and experiments (some legacy)
 
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|}
  

Latest revision as of 10:50, 25 March 2024

DOCK

Visualization Software

Basic Linux Tools

Molecular Dynamics

GROMACS

Monte Carlo

Analysis Tools

Databases

Conversion between file types