Difference between revisions of "Rizzo Lab Information and Tutorials"
From Rizzo_Lab
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(→Basic Linux Tools) |
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|[[vi ]] | |[[vi ]] | ||
|[[sed - Stream Editor in Unix]] | |[[sed - Stream Editor in Unix]] | ||
| + | |[[find]] | ||
|- | |- | ||
|[[Stupid awk tricks]] | |[[Stupid awk tricks]] | ||
Revision as of 11:57, 17 June 2009
Contents
Visualization Software
Basic Linux Tools
| Unix | vi | sed - Stream Editor in Unix | find |
| Stupid awk tricks | Ways to remove the first line | PBS Queue | |
| gdb (GNU Debugger) | Common Errors - ctrl M | C Shell Scripting |
DOCKing
Molecular Dynamics
| AMBER Tutorials | AMBER tricks |
| NAMD tutorial | ptraj |
Monte Carlo
Analysis Tools
Databases
- NCI (ligand database)
- NIST (small molecule database)
- ZINC (ligand database)
- Families in the Protein Databank
BlueGene
| Get time estimate for free blocks | Get Job ids to use for llcancel | Get time for job completion |
| Submitting BlueGene Jobs | Compiling Applications for BG/L | Compiling Applications for BG/P |
